Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060535.seq
         (544 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23AX3 Cluster: Hypothetical repeat containing protein;...    35   1.4  
UniRef50_UPI0000E4835F Cluster: PREDICTED: similar to scavenger ...    32   7.4  
UniRef50_Q22SJ1 Cluster: Putative uncharacterized protein; n=6; ...    32   7.4  
UniRef50_Q4T6A2 Cluster: Chromosome undetermined SCAF8850, whole...    32   9.8  

>UniRef50_Q23AX3 Cluster: Hypothetical repeat containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: Hypothetical repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 3011

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 289  PKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQSPQLQFRGSLVQX 468
            P+ EV D +  P++   YD D      D+I   LL+       I+LQ+  +   GSL+  
Sbjct: 1903 PEYEVFDKQWEPIIDEFYDQDNTLANSDKILIQLLD-------IYLQNNLMSRDGSLILE 1955

Query: 469  LRDATKKLG-LTIANCTLPC 525
            L   TKK+G + +    L C
Sbjct: 1956 LTGQTKKIGKVNLRGINLSC 1975


>UniRef50_UPI0000E4835F Cluster: PREDICTED: similar to scavenger
           receptor cysteine-rich protein precursor; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           scavenger receptor cysteine-rich protein precursor -
           Strongylocentrotus purpuratus
          Length = 745

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 372 IPVLTMVIVIIISQYHRVHLRVCYLNFWAAXGRSMXPDT--HKFNLAIFKVSI 220
           IP L +++   I++    H  VC+L  WA  G  + P T    FN+ IF + +
Sbjct: 636 IPALIVIVTGAIAEDKYAHGDVCFLELWAQIGGLLIPMTIILLFNVVIFALIV 688


>UniRef50_Q22SJ1 Cluster: Putative uncharacterized protein; n=6;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 3090

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 328  VLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQSPQLQFRGSLVQXLRDATKKLGLTIA 507
            VL  Y  ++H  Y+ +   SL     E +  +LQSP +Q RG+  Q +    K +  ++ 
Sbjct: 1734 VLNSYTSNFHTYYQYQGTFSLSNSTFENNS-NLQSPLIQLRGNSYQVIYTTFKNISCSVC 1792

Query: 508  N 510
            N
Sbjct: 1793 N 1793


>UniRef50_Q4T6A2 Cluster: Chromosome undetermined SCAF8850, whole
           genome shotgun sequence; n=2; Euteleostomi|Rep:
           Chromosome undetermined SCAF8850, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1259

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 319 NPVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQSPQLQFRGSLVQXLR 474
           NP+++ D +  Y+ + R E+++ L E+  +  P H  +  L F  +L++  R
Sbjct: 128 NPLLINDLNMQYYIQDRREVYRILQEEGIDLPPKHKVTNMLVFASALMETHR 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,375,506
Number of Sequences: 1657284
Number of extensions: 7648772
Number of successful extensions: 17288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17281
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)