Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060535.seq
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.2  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   9.5  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 12   HVMK*NKKYFHVFDDSRRYIVVLSDVS 92
            H+M+  K+ + V +D   YI VLSD++
Sbjct: 1023 HLMQRIKQSYDVIEDGNNYIYVLSDMA 1049


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 107 LILAVIIYFCSALSFDTSIHVVNVRKVDVLNFYLHFGEMETLNMAKLNL 253
           LI AV  Y C AL+ +   HV+ V ++    F+L   E++    ++L +
Sbjct: 442 LIDAVKQYICLALAKNVVSHVLPVFEISCEIFWLILSELKNFFKSELEV 490


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 78  EQQYSGVNHQIRENTFYFISSHGL 7
           +QQ +G +H+   N + F+ +HG+
Sbjct: 366 QQQVTGYHHKDGNNEWMFVPTHGV 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,723
Number of Sequences: 5004
Number of extensions: 33982
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)