Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060535.seq
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)                      29   3.2  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   27   7.5  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 27   9.9  
SB_46627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)                       27   9.9  

>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
          Length = 367

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 325 VVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQ 429
           V +TD    Y CE + E   S  E   EK+P H+Q
Sbjct: 70  VSVTDLVSQYWCEQQMEYGYSCAELLPEKTPTHIQ 104


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 424 LQSPQLQFRGSLVQXLRDATKKLGLTIANCTLPCPAG 534
           +  PQLQ  G L+Q   D      +  + C+  CPAG
Sbjct: 444 VSKPQLQVNGKLIQWKTDTN---AVPTSECSKKCPAG 477


>SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 279 GRSMXPDTHKFNLAIFKVSISPKCR*KFNTSTFL 178
           G+ +  +   F+  + KVS++ KC   FN S FL
Sbjct: 54  GKRLSKNNATFSCVLVKVSVTVKCEIFFNRSPFL 87


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 445  IAAEVTADESVISLXPAQVSSSISHPCTHNGNRH 344
            I AE+   + +++L  +Q+S ++ HPC  N   H
Sbjct: 1242 IQAEIDVTD-LVALDRSQISGTVPHPCKQNDCSH 1274


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 335  LIMMTITIVSTGMRYGRAYL 394
            LI++TI++V TG+R+G A L
Sbjct: 1262 LIVLTISLVITGLRFGTAVL 1281


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 348 VIIISQYHRVHLR-VCYLNF-WAAXGRSMXPDTHKFNLAIFKVSISPKC 208
           VI +S   RV  R   YL F W    R    DT++    IF    SP C
Sbjct: 454 VIAVSADMRVIKRDKAYLRFLWRGADRDRPSDTYQMEAIIFGAKCSPTC 502


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 106 INISSYNLLLFGSVI*HKYPRGECQKSRRVKFLPTF 213
           + +  YNL ++     HK  R    K R V FLPTF
Sbjct: 281 VGVHLYNLNMWTVDAYHKVRRTPADKGRPVWFLPTF 316


>SB_46627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +1

Query: 298 EVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIH-----LQSPQLQFRGSLV 462
           E+  P++ P+V    +DD    Y  E    L E    + P H     L+  ++ FRGSL 
Sbjct: 155 EINRPEIIPLVTVTREDDEEPLYSREDELDLGEMVLREEPFHPSEGKLEIGEMVFRGSLP 214

Query: 463 QXLRDA---TKKLGLTIAN 510
             L      +K+L L +A+
Sbjct: 215 PLLAPKVIDSKRLALPMAH 233


>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 604

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 430 SPQLQFRGSLVQXLRDATKKLGLTIANCTLPCPAG 534
           S QLQ   +LVQ  ++  +  G+ ++ C  PCP G
Sbjct: 219 SRQLQIDDTLVQWKKEGIE--GVPVSVCRAPCPPG 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,311
Number of Sequences: 59808
Number of extensions: 247529
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)