Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060535.seq
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    28   5.0  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 253 MSVRXHASTXSGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLL 393
           M++  H     G  V + +   N  V+TD +DD   +Y D + ++ L
Sbjct: 732 MAIEAHFERYVGSVVPILNNAQNAAVVTDPNDDDQVDYVDRLREACL 778


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 436 EVTADESVISLXPAQVSSSISHPCTHNGNRHHNQSI 329
           +V+A     S+   Q S+++ HP  HN +  H++S+
Sbjct: 102 QVSAPNLHTSVNNGQSSATVPHPSHHNVHHQHSKSV 137


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 292 KVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQSP 435
           KVE++       V  + DDD   ++ DEI +    +  +++PI ++ P
Sbjct: 155 KVEISRKTNKARVFQEEDDDDEDDFSDEIDEKFYSKTNKRTPITIKIP 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,730
Number of Sequences: 27780
Number of extensions: 192081
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)