Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060535.seq
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    29   2.0  
At2g40130.2 68415.m04936 heat shock protein-related contains sim...    27   8.1  

>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 259 VRXHASTXSGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPI 420
           VR  A    G  +++       VV  ++DDD      D I KSLL+  ++ SP+
Sbjct: 654 VRAAAVFALGTLLDIGFDSNKSVVEDEFDDDEKIRAEDAIIKSLLDVVSDGSPL 707


>At2g40130.2 68415.m04936 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 910

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 322 PVVLTDYDDDYHCEYRDEIWKSLLEQXAEKSPIHLQSPQLQFRGSLVQXLRDATKK 489
           P   T+ ++ YHCE    +W  L+     K  I +      F G L + ++ + K+
Sbjct: 773 PAQETEIEEKYHCEENSNVW--LMNLKNHKRLIEVPFKPFDFEG-LAEKIKKSVKE 825


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,741
Number of Sequences: 28952
Number of extensions: 172648
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)