Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q90162 Cluster: DNA polymerase; n=15; Nucleopolyhedrovi...   144   2e-33
UniRef50_Q0N434 Cluster: DNA polymerase; n=13; Nucleopolyhedrovi...   107   3e-22
UniRef50_Q80LN8 Cluster: DNA polymerase; n=1; Adoxophyes honmai ...   106   4e-22
UniRef50_P30318 Cluster: DNA polymerase; n=9; Nucleopolyhedrovir...   105   1e-21
UniRef50_A0EYW1 Cluster: DNA polymerase; n=3; Nucleopolyhedrovir...   102   9e-21
UniRef50_Q6QXG1 Cluster: DNA polymerase; n=10; Granulovirus|Rep:...    60   5e-08
UniRef50_Q9DVU0 Cluster: DNA polymerase; n=1; Plutella xylostell...    48   2e-04

>UniRef50_Q90162 Cluster: DNA polymerase; n=15;
            Nucleopolyhedrovirus|Rep: DNA polymerase - Choristoneura
            fumiferana nuclear polyhedrosis virus (CfMNPV)
          Length = 990

 Score =  144 bits (349), Expect = 2e-33
 Identities = 65/85 (76%), Positives = 73/85 (85%)
 Frame = -3

Query: 509  LVNKGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDPVKMRISWIKHMGILCTFMNEL 330
            L+NKGTDFVPGNGDRIPY+L+DI+G VT+KAYPLRLFDP  MRISW+KHM IL TFMNEL
Sbjct: 829  LLNKGTDFVPGNGDRIPYVLLDIQGSVTQKAYPLRLFDPRTMRISWLKHMTILNTFMNEL 888

Query: 329  LEIFGDEQKDNLAKCFTAIMQKYMQ 255
            LEIFGDE    L KC+ AI+ KYMQ
Sbjct: 889  LEIFGDEHTSALNKCYDAILTKYMQ 913



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 26/57 (45%), Positives = 32/57 (56%)
 Frame = -1

Query: 649 KXMTDYSF*YDX*RLPRPKNANRLTINNEGPSPKRRVITVARHCREIWLTKARILCP 479
           K +TDYSF      +     A ++T N   P+ KRRV+TVARHCREI L K     P
Sbjct: 788 KPLTDYSF-----SMTYNDGAGKVTENESRPT-KRRVVTVARHCREILLNKGTDFVP 838


>UniRef50_Q0N434 Cluster: DNA polymerase; n=13;
            Nucleopolyhedrovirus|Rep: DNA polymerase - Clanis
            bilineata nucleopolyhedrosis virus
          Length = 1060

 Score =  107 bits (256), Expect = 3e-22
 Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
 Frame = -3

Query: 509  LVNKGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDP--VKMRISWIKHMGILCTFMN 336
            L + G DF+PG GDRIPYLLIDI+ K+T+KAYPL+LF+P     RISW+KHM ILC FMN
Sbjct: 883  LASSGVDFLPGTGDRIPYLLIDIKEKITQKAYPLKLFNPQSASHRISWLKHMSILCNFMN 942

Query: 335  ELLEIFGDEQKDNLAKCFTAIMQKYM 258
            EL+ +FGD  +D     F+ I   YM
Sbjct: 943  ELMFVFGD--RDEFEYYFSQICSVYM 966


>UniRef50_Q80LN8 Cluster: DNA polymerase; n=1; Adoxophyes honmai
            NPV|Rep: DNA polymerase - Adoxophyes honmai
            nucleopolyhedrovirus
          Length = 1019

 Score =  106 bits (255), Expect = 4e-22
 Identities = 43/66 (65%), Positives = 54/66 (81%)
 Frame = -3

Query: 509  LVNKGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDPVKMRISWIKHMGILCTFMNEL 330
            L+  G DF+PGNGDRIP+LL D++GK+ EKAYPL+LFD     +SWIKHM ILC FMNEL
Sbjct: 855  LIEAGADFIPGNGDRIPFLLTDVKGKIGEKAYPLKLFDRSGRSVSWIKHMSILCMFMNEL 914

Query: 329  LEIFGD 312
            +++FGD
Sbjct: 915  IQVFGD 920


>UniRef50_P30318 Cluster: DNA polymerase; n=9;
            Nucleopolyhedrovirus|Rep: DNA polymerase - Lymantria
            dispar multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 1014

 Score =  105 bits (252), Expect = 1e-21
 Identities = 46/85 (54%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
 Frame = -3

Query: 509  LVNKGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLFDP--VKMRISWIKHMGILCTFMN 336
            L N G DF+PGNGDRI Y+L+D++ K+T+KA+PL+LFDP    ++ISW+KHM ILCTFMN
Sbjct: 854  LANPGVDFLPGNGDRIQYVLVDVKEKITQKAFPLKLFDPDSPTLQISWLKHMNILCTFMN 913

Query: 335  ELLEIFGDEQKDNLAKCFTAIMQKY 261
            EL+++FG+  +      F AI+ +Y
Sbjct: 914  ELIQVFGN--RPEFEHYFGAIVDEY 936


>UniRef50_A0EYW1 Cluster: DNA polymerase; n=3;
            Nucleopolyhedrovirus|Rep: DNA polymerase - Ecotropis
            obliqua NPV
          Length = 1065

 Score =  102 bits (244), Expect = 9e-21
 Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
 Frame = -3

Query: 509  LVNKGTDFVPGNGDRIPYLLIDIEGKVTEKAYPLRLF--DPVKMRISWIKHMGILCTFMN 336
            L+  GT  +PGNGDRIP+LLIDI+GK+TEK+YPL LF  +   +R+SW+KHM I+C FMN
Sbjct: 900  LLQSGTKHLPGNGDRIPFLLIDIKGKITEKSYPLELFKANSASVRVSWLKHMNIMCNFMN 959

Query: 335  ELLEIFGDEQKDNLAKCFTAIMQKYM 258
            EL+++FG+  +      FT I   YM
Sbjct: 960  ELIQVFGN--RPEFTHYFTNICALYM 983


>UniRef50_Q6QXG1 Cluster: DNA polymerase; n=10; Granulovirus|Rep: DNA
            polymerase - Agrotis segetum granulosis virus (AsGV)
            (Agrotis segetumgranulovirus)
          Length = 1145

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
 Frame = -3

Query: 503  NKGTDFVPGNGDRIPYLLIDIEGK-VTEKAYPLRLFDPVKMRISWIKHMGILCTFMNELL 327
            +  T ++P +GDRIPY+L D     V +KA+P ++F+      SW KH+GI+CTF+N+++
Sbjct: 895  SSNTKYIPASGDRIPYILEDKRSNNVKDKAWPTQIFED--QNPSWNKHLGIVCTFLNDIM 952

Query: 326  EIFGDE 309
             +  ++
Sbjct: 953  SMLRND 958


>UniRef50_Q9DVU0 Cluster: DNA polymerase; n=1; Plutella xylostella
           granulovirus|Rep: DNA polymerase - Plutella xylostella
           granulovirus
          Length = 979

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = -3

Query: 485 VPGNGDRIPYLLIDIE--GKVTEKAYPLRLFDPVKMRISWIKHMGILCTFMNELLEIFGD 312
           VP  G+RI YLL D     KV ++  PL L    +  I+W KH+ I+CTF N+L+ +  +
Sbjct: 784 VPNFGERIQYLLEDKSQADKVGDRVIPLDLVSE-RTNINWSKHLSIVCTFFNDLMSMMRN 842

Query: 311 EQKDNLA 291
           +    LA
Sbjct: 843 DDLFQLA 849


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,234,818
Number of Sequences: 1657284
Number of extensions: 10512423
Number of successful extensions: 26559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26553
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)