Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.35 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   2.5  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    27   3.3  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.8  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 498 RHGFCARQRRSYPVPFDRHRGQGNRKSVPVAFVRSSKNAN 379
           +HG C R R S  V  + HR  GN   V V  + S  N N
Sbjct: 181 KHGICDRTRISCLVIDEAHRSTGNYAYVEVVHLLSLSNKN 220


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 404 LFDPVKMRISWIKHMGILCTFMNELLEIFGDE 309
           L D +K  + W +H  ++CT +  L+++ G E
Sbjct: 153 LLDSLKHALHWDRHAKVVCTAIQLLVKVTGAE 184


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 416 YPLRLFDPVKMRISWIKHMGILCTFMNELLEIFGDEQKDNLAKCFTAIMQKYMQI 252
           Y L  F  V+   SWI  + +   F N LL     EQ+++++K    + Q+ M I
Sbjct: 635 YALTKFISVQTSCSWITGLTLRLCFQNVLL-----EQQEDISKSSCELAQRVMDI 684


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 420 SVPVAFVRSSKNANQLDKTHGHFVHIYERVAGNI 319
           ++P+A   SS   N  +K   H  H+++   GNI
Sbjct: 102 NIPIALATSSDTHN-FEKKSAHLSHLFDHFDGNI 134


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/58 (39%), Positives = 29/58 (50%)
 Frame = +1

Query: 385 IFTGSNKRNGYAFSVTLPSMSIKRYGIRSPLPGTKSVPLLTKFLYNAEPP*SHVFWAT 558
           IF  SN+RN    S +       + G  S    T S+PL T  L N+EPP SHV  A+
Sbjct: 412 IFLNSNQRND-ELSASGSQEPHPKDGTNS----TSSLPLDTNNLSNSEPP-SHVLDAS 463


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 530  GSAL*RNLVNKGTDFVPGNGDRIPYLLI 447
            G+ + R L+ K     P  G+R+PYL+I
Sbjct: 1265 GAVMARRLMTKDPRREPQYGERVPYLII 1292


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 255 LHVLLHNCGKTLCKIILL-FVAKYFQQLVHKCAQNAHVFYPADSHFYWIE 401
           L V L N   T+ + ILL  +  +F      C    HV++ A   FYW +
Sbjct: 178 LMVALDNHLATISRFILLDSMLLFFIISTFFCLSRYHVYHKAPFTFYWFK 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,499
Number of Sequences: 5004
Number of extensions: 44629
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)