Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155...    29   3.4  
01_07_0075 + 40908875-40909069,40909147-40909215,40909363-409094...    29   3.4  
10_07_0186 - 13912973-13913015,13913467-13913773,13913983-139140...    29   4.5  
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016...    28   6.0  
02_05_0846 + 32173853-32173931,32174047-32174118,32174221-321744...    28   6.0  
09_01_0147 + 2229362-2229431,2229503-2229525                           28   7.9  

>09_06_0148 -
           21214460-21214561,21214993-21215339,21215428-21215538,
           21215673-21215835,21215921-21215999,21216110-21216228
          Length = 306

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 378 QLDKTHGHFVHIYERVAGNIWRRTKG*SCKVFYRNYAK 265
           +L  TH H    Y R+ G+ W R       V+YR+ A+
Sbjct: 244 ELKATHPHREREYSRMIGDAWNRLAADDKMVYYRHSAE 281


>01_07_0075 +
           40908875-40909069,40909147-40909215,40909363-40909461,
           40909999-40910078,40910162-40910444,40910557-40910580,
           40911039-40911700,40912037-40912121,40912203-40912254,
           40912336-40912385,40912450-40912497,40912590-40912766
          Length = 607

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 334 SCWKYLATNKRIILQSVLPQLCKSTCRSIVRS 239
           +CW YL  +  + L+ VLP+L   T  +++ S
Sbjct: 106 ACWGYLCQSATLELREVLPKLSSQTLHALLTS 137


>10_07_0186 -
           13912973-13913015,13913467-13913773,13913983-13914043,
           13914124-13914299,13914393-13914450,13914709-13914776,
           13915591-13915666,13916523-13916627,13916711-13916768,
           13916874-13917031
          Length = 369

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 595 KNANRLTINNEGPSPKRRVITVARHCREIWLTKA 494
           KN N +   NE P   R+   V  HCR  W T A
Sbjct: 332 KNPNYMVGTNEAPGFCRKSCNVCAHCRIEWNTYA 365


>03_04_0019 +
           16500877-16501029,16501184-16501240,16501560-16501668,
           16501837-16502021,16502103-16502182,16502869-16503085,
           16503394-16503633,16503720-16504028
          Length = 449

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 407 RLFDPVKMRISWIKHMGILCTFMNELLEIFGDEQKDNLAKCFTAIMQKYMQI-NCTIEKN 231
           RL+  +K  +     +  LC F++ +LE+FG +  D   KC T  +   ++  N T EK 
Sbjct: 156 RLYTIIKFGLVQYMILKSLCAFLSSILELFG-KYGDGEFKCQTWALYCLVKFYNATHEKL 214

Query: 230 Q 228
           Q
Sbjct: 215 Q 215


>02_05_0846 +
           32173853-32173931,32174047-32174118,32174221-32174430,
           32174545-32174636
          Length = 150

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 356 CPCVLSS*FAFLLDRTNATGTLFLLPCPRCLSKGTGYDLRCRAQNPCL 499
           CPC+     A ++D+    GT     CP CL+ GT Y L C +   CL
Sbjct: 33  CPCITFGQVADIVDK----GT-----CP-CLASGTAYALLCASGMGCL 70


>09_01_0147 + 2229362-2229431,2229503-2229525
          Length = 30

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 462 PVPFDRHRGQGNRKSVP 412
           P PF  HRGQG+R++ P
Sbjct: 14  PSPFHVHRGQGSRQTTP 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,358
Number of Sequences: 37544
Number of extensions: 295467
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)