Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)                   29   3.5  
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)          28   8.0  

>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
          Length = 373

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 331 CWKYLATNKRIILQSVLPQLCKSTCRSIVRSKRTSVSKN*PK 206
           CW Y +T       + L Q+CK+T  +I     T + K+ PK
Sbjct: 136 CWHYTSTKTTRETTTRLVQMCKNTSTNIGHRFLTLIDKHFPK 177


>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
          Length = 902

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 589 ANRLTINNEGPSPKRRVITVARHCRE 512
           AN  T   EG   +RR + +ARHC++
Sbjct: 749 ANNDTFTEEGLRRERRKVNLARHCKD 774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,848
Number of Sequences: 59808
Number of extensions: 358671
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)