Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399505-1|AAK94990.1|  218|Homo sapiens olfactory receptor prot...    31   2.8  
AB065939-1|BAC06154.1|  264|Homo sapiens seven transmembrane hel...    31   2.8  
AB065763-1|BAC05983.1|  323|Homo sapiens seven transmembrane hel...    31   2.8  

>AF399505-1|AAK94990.1|  218|Homo sapiens olfactory receptor
           protein.
          Length = 218

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 HVLLHNCGKTLCKIILLFVAKYFQQLVHKCAQN 356
           H  L  CG  LC I++ +V  +F  L H   +N
Sbjct: 168 HKALSTCGSHLCVILMFYVPSFFTLLTHHFGRN 200


>AB065939-1|BAC06154.1|  264|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 264

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 HVLLHNCGKTLCKIILLFVAKYFQQLVHKCAQN 356
           H  L  CG  LC I++ +V  +F  L H   +N
Sbjct: 178 HKALSTCGSHLCVILMFYVPSFFTLLTHHFGRN 210


>AB065763-1|BAC05983.1|  323|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 HVLLHNCGKTLCKIILLFVAKYFQQLVHKCAQN 356
           H  L  CG  LC I++ +V  +F  L H   +N
Sbjct: 237 HKALSTCGSHLCVILMFYVPSFFTLLTHHFGRN 269


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,548,293
Number of Sequences: 237096
Number of extensions: 1578343
Number of successful extensions: 8230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8230
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)