Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    31   0.57 
Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 288 LCKIILLFVAKYFQQLVHKCAQNAHVFYPADSHFYWIEQTQRVRFFCYLALDVY 449
           LC  I+LF    +   V++    A   +P  +HFY + +T  + F C L L ++
Sbjct: 33  LCCYIVLFPFYVYVNKVNRKRDEAAFIFPITNHFYKMVKTSYIIFTCGLLLVLF 86


>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 341 MNELLEIFGDEQKDNLAKCFTAIMQKYMQINCTI 240
           +NELLE+  DE K  L   F  +++ + ++N ++
Sbjct: 293 VNELLEVVRDEMKPKLRSSFIRMIKSFWKMNFSL 326


>AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical
           protein T27B7.6 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 309 FVAKYFQQLVHKCAQNAHVFYPADSHFYWIEQTQRVRFFCYLA 437
           +V K +Q  + + A+        D H Y++E+  R R+F  LA
Sbjct: 309 YVGKRYQGDILRVAEQFQEILANDLHHYYVEEMNRPRYFQRLA 351


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = -3

Query: 410 LRLFDPVKMRISWIKH----MGILCTFMNELLEIF--GDEQKDNLA--KCFTAIMQKYMQ 255
           L  F   KMRI+WI H    +   C+F+  LL I+   DE+K +L   +        Y  
Sbjct: 26  LSFFKFWKMRINWIHHYAPKISGSCSFVINLLSIYIAHDERKTHLGNYRILLIFFSIYNI 85

Query: 254 INCTIE 237
           +N TI+
Sbjct: 86  LNSTID 91


>AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical
           protein C17H12.12 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 367 FIQLIRIFTGSNKRNGYAFSVTLPSMSIKRYGIRSPLPGTKSVPLLTKFLYNAE 528
           F   IRIF  S+ RN   ++V   + +IKRY I+          +  KF   AE
Sbjct: 24  FHHKIRIFNSSDLRNPKVYTVQELTETIKRYDIQRIRGDFSQCNITLKFSSGAE 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,041
Number of Sequences: 27780
Number of extensions: 270960
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)