Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060534.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15140.1 68416.m01915 exonuclease family protein contains exo...    29   2.8  
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    28   4.9  
At2g26870.1 68415.m03224 phosphoesterase family protein low simi...    28   4.9  

>At3g15140.1 68416.m01915 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 337

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 458 YLLIDIEGKVTEKAYPLRLFDPVKMRISWIKHMGILCTFMNE 333
           +L+ID+EGKV    +P+ + D   M +  + H  +  T M+E
Sbjct: 129 FLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSE 170


>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 383 AFLLDRTNATGTLFLLPCPRCLSKGTGYDL-RCRAQNPCLC*PNFSTMPSHRNHTSFGRR 559
           +FLLD T     L L+    C +K  G+D+   + +   L     S   S R   S GRR
Sbjct: 701 SFLLDATLKFPMLRLVSLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDR--CSLGRR 758

Query: 560 TFIIYRQPICVFWPG*SL 613
              ++R+ + + W G +L
Sbjct: 759 AAPMHRETLVMLWNGQTL 776


>At2g26870.1 68415.m03224 phosphoesterase family protein low
           similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
           precursor (EC 3.1.4.3) (Phosphatidylcholine
           cholinephosphohydrolase) {Burkholderia pseudomallei};
           contains Pfam profile PF04185: Phosphoesterase family
          Length = 514

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 413 PLRLFDPVKMRISWIKHMGILCTFMNELLEIFGDEQKDNLAKCFTAIMQKYMQI 252
           P  L +PVK+R+       +L  F  EL+++    + DN+   F   + K M +
Sbjct: 418 PETLPEPVKIRMGEANEKALLTEFQQELVQLAAVLKGDNMLTTFPKEISKGMTV 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,676
Number of Sequences: 28952
Number of extensions: 238883
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)