Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060533.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    38   0.010
06_01_0601 + 4337575-4340149,4340566-4340978                           31   0.85 
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    31   0.85 
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    29   2.6  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +1

Query: 316 RKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQD-PNIKEAGIGMFTXVPGVXGNR 492
           +K CD +SELA   + +   N W E L  +F  AS  + PN++E+ + +F  +       
Sbjct: 129 KKVCDAISELAALLLPE---NAWAELLPFLFRAASGPEAPNLQESALLIFARLADYIAES 185

Query: 493 XTGNLV**KAVXNLLCSPM 549
              +L+    + NLL S +
Sbjct: 186 LLDHLM---TIHNLLASAL 201


>06_01_0601 + 4337575-4340149,4340566-4340978
          Length = 995

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 343 LARXHIDD-DGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNRXTGNL 507
           L+  H    DGN     F   + NC    +  +  AG+G    +P + GN  + NL
Sbjct: 247 LSHNHFSSSDGNTNLVPFFSSLVNCTGLLELGVASAGVG--GEIPAIIGNVSSANL 300


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
           RR   +VVS +A+  +      +WPE L  +F C+ +   + +E  + +F+ +    G  
Sbjct: 96  RRASANVVSIIAKYAVPA---GEWPELLPFIFQCSQSPQEDHREVALILFSSLTETIGTT 152

Query: 493 XTGNL 507
              +L
Sbjct: 153 FQSHL 157


>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 497 VXRFPXTPGTXVNIPIPASLMFGSCALAQLNMXCRNS 387
           V   P T    V+IP P S+  G CA+    + C+NS
Sbjct: 21  VAECPDTKCGSVDIPYPFSIGPGRCAMPGFELACKNS 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,332
Number of Sequences: 37544
Number of extensions: 210420
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)