Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060533.seq
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5... 73 1e-12
U72761-1|AAC51317.1| 1097|Homo sapiens karyopherin beta 3 protein. 73 1e-12
BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5 p... 73 1e-12
BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein. 73 1e-12
BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein. 73 1e-12
AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5 p... 73 1e-12
AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5 p... 73 1e-12
AL356580-3|CAI13758.1| 76|Homo sapiens RAN binding protein 5 p... 63 8e-10
AL356580-4|CAI13759.1| 126|Homo sapiens RAN binding protein 5 p... 63 1e-09
BX537405-1|CAD97647.1| 1109|Homo sapiens hypothetical protein pr... 51 3e-06
BC098406-1|AAH98406.1| 1105|Homo sapiens RAN binding protein 6 p... 51 3e-06
AL162384-1|CAI12713.1| 1105|Homo sapiens RAN binding protein 6 p... 51 3e-06
AF039023-1|AAC14260.1| 1105|Homo sapiens Ran-GTP binding protein... 51 3e-06
>Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5
protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>U72761-1|AAC51317.1| 1097|Homo sapiens karyopherin beta 3 protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5
protein.
Length = 1115
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 124 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 183
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 23 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 82
>BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 72.5 bits (170), Expect = 1e-12
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F PG+ GN+
Sbjct: 106 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQ 165
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>AL356580-3|CAI13758.1| 76|Homo sapiens RAN binding protein 5
protein.
Length = 76
Score = 63.3 bits (147), Expect = 8e-10
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAAV 190
A +Q QFY LL LLS N +R QAE+ Y NIP +K+ L+ +I+N AE+ RQ AAV
Sbjct: 5 AAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
>AL356580-4|CAI13759.1| 126|Homo sapiens RAN binding protein 5
protein.
Length = 126
Score = 62.9 bits (146), Expect = 1e-09
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMF 462
R+K CD+ +ELAR ID+DGNNQWPE L+ +F+ S+Q+ ++EA + +F
Sbjct: 77 RKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIF 126
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 11 AGDQAQFYQLLNTLLSTXNDIRSQAE 88
A +Q QFY LL LLS N +R QAE
Sbjct: 3 AAEQQQFYLLLGNLLSPDNVVRKQAE 28
>BX537405-1|CAD97647.1| 1109|Homo sapiens hypothetical protein
protein.
Length = 1109
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ + LAR ID+DG N WPE L+ + + +++ + E + +F PG+ G +
Sbjct: 118 RKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFGTQ 177
Query: 493 XTGNL 507
+L
Sbjct: 178 ERHDL 182
Score = 48.0 bits (109), Expect = 3e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 17 DQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAA 187
++ +FYQLL L++ +R QAE+ Y NIP K L+++++N +VRQ AA
Sbjct: 19 EKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAA 75
>BC098406-1|AAH98406.1| 1105|Homo sapiens RAN binding protein 6
protein.
Length = 1105
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ + LAR ID+DG N WPE L+ + + +++ + E + +F PG+ G +
Sbjct: 114 RKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFGTQ 173
Query: 493 XTGNL 507
+L
Sbjct: 174 ERHDL 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 17 DQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAA 187
++ +FYQLL L++ +R QAE+ Y NIP K L+++++N +VRQ AA
Sbjct: 15 EKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAA 71
>AL162384-1|CAI12713.1| 1105|Homo sapiens RAN binding protein 6
protein.
Length = 1105
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ + LAR ID+DG N WPE L+ + + +++ + E + +F PG+ G +
Sbjct: 114 RKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFGTQ 173
Query: 493 XTGNL 507
+L
Sbjct: 174 ERHDL 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 17 DQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAA 187
++ +FYQLL L++ +R QAE+ Y NIP K L+++++N +VRQ AA
Sbjct: 15 EKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAA 71
>AF039023-1|AAC14260.1| 1105|Homo sapiens Ran-GTP binding protein
protein.
Length = 1105
Score = 51.2 bits (117), Expect = 3e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNR 492
R+K CD+ + LAR ID+DG N WPE L+ + + +++ + E + +F PG+ G +
Sbjct: 114 RKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFGTQ 173
Query: 493 XTGNL 507
+L
Sbjct: 174 ERHDL 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 17 DQAQFYQLLNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAA 187
++ +FYQLL L++ +R QAE+ Y NIP K L+++++N +VRQ AA
Sbjct: 15 EKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAA 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,352,616
Number of Sequences: 237096
Number of extensions: 1133639
Number of successful extensions: 1728
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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