Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060533.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    40   0.001
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    35   0.057
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    32   0.40 
At2g17780.1 68415.m02059 expressed protein contains Pfam profile...    28   6.5  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 316 RKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGNRX 495
           +K CD VSELA   + ++G   WPE L  +F C ++  P ++E+   +   +    G   
Sbjct: 122 KKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETL 178

Query: 496 TGNL 507
           T ++
Sbjct: 179 TPHI 182


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 41  LNTLLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAEDVRQXAA 187
           +N   S  ND+  Q   A+ N+PT T + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 313 RRKXCDVVSELARXHIDDDGNNQWPEFLQXMFNCASAQDPNIKEAGIGMFTXVPGVXGN 489
           RR   +VVS +A+  +      +WP+ L  +F C+ +   + +E  + +F+ +    GN
Sbjct: 96  RRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHREVALILFSSLTETIGN 151


>At2g17780.1 68415.m02059 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 416

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 50  LLSTXNDIRSQAEDAYNNIPTXTKVVHLVNSIQNADIAE 166
           LL+   +I +Q E A N I    K+V L+N   NA I E
Sbjct: 100 LLAMGWNIVNQFEKAQNEIDLFLKIVPLINMADNARIRE 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,442
Number of Sequences: 28952
Number of extensions: 166810
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)