Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060532.seq
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 98 1e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 71 2e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 63 4e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 50 3e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 2e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 4e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 44 2e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 5e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 6e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 3e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 37 0.002
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.009
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.022
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.050
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.050
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.050
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 31 0.15
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.35
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 29 0.62
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.82
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 4.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.4
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 5.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKN 508
K +G++ PTPIQ Q WP+AMSG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD 161
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/53 (52%), Positives = 43/53 (81%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKF 660
++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIF 508
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 440 TMGYKEPTPIQAQGWPIAMSGKN 508
++GY++PT IQAQ P SG++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.9 bits (146), Expect = 4e-11
Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELA 648
K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELA
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +2
Query: 338 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.0 bits (114), Expect = 3e-07
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKFS 663
K+LV A TGSGKTLAY+LP + + G G AL++APTRELAT F+
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFN 90
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKF 660
++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA F
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTF 128
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELA 648
++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRELA
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELA 127
Score = 30.3 bits (65), Expect = 0.27
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKFSKV 669
+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA + +
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENL 256
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 329 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 499
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 500 GKN 508
G++
Sbjct: 202 GRD 204
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELA 648
K+LV A+TGSGKT AY++P + + Q I G AL+L PTRELA
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELA 101
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +2
Query: 365 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+++VG+A+TGSGKT A+++P I H+ + AL+L+P RELA
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELA 152
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 520 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTREL 645
AQTGSGKTLAY+LP + + P R G A+++APTREL
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTREL 228
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
K++VG A TGSGKT A+I+P + + +P ++ L+L PTRELA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELA 343
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELATTKFSKVAA 675
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA F VA
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFG-VAK 182
Query: 676 E 678
E
Sbjct: 183 E 183
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+ +G A+TGSGKT A+ LP I + P G AL+L PTRELA
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELA 88
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +1
Query: 505 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELA 648
+++G A TGSGKTLA+ +P + H +R D ALV+APTRELA
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELA 205
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 32.7 bits (71), Expect = 0.050
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 642
++L+ AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 643 L 645
L
Sbjct: 267 L 267
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
++L+ A TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 520 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKFSK 666
A+TG+GKTLA++L A + P +++L+PTRELA F +
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEE 131
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+ ++G +Q+G+GKT A+ L + ++ P P A+ LAP+RELA
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELA 197
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.022
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 32.7 bits (71), Expect = 0.050
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 445 GLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 624
G +R + + ++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 625 LAPTRELA 648
L PTRELA
Sbjct: 118 LVPTRELA 125
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.050
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 520 AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTREL 645
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTREL 217
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 508 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
L+ V TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 508 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
L+ V TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 445 GLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 624
G +R A + ++++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 625 LAPTRELA 648
LAPTRELA
Sbjct: 93 LAPTRELA 100
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 329 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 478
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 29.1 bits (62), Expect = 0.62
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 445 GLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 624
G + A S + ++++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 625 LAPTRELA 648
L+PTRELA
Sbjct: 95 LSPTRELA 102
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 0.62
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 618
D+G + + S + +++ A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 619 -LVLAPTRELA 648
LVL TRELA
Sbjct: 122 VLVLCHTRELA 132
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.82
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 248 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 75
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 74 HDYFSDLVEDVYLNYGFFLTQG 9
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 457 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 332
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 648 G*LSGRRQDQSNRTITSPNRRLVI 577
G LSG+R D S RT+ SP+ L I
Sbjct: 348 GNLSGKRVDFSGRTVISPDPNLRI 371
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 317 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 448
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 317 PYEVEEYRNKHEVTVS 364
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 569 TIAGKM*ANVLPEPVWATPTNSFQT*LSASLELEWASVLCNPLSLHLVAHNQENL 405
++A + A +LP P ++P+++F+T S E + C+P H A+ E++
Sbjct: 4 SVATSLKAEILPSPRTSSPSSNFKT--CVSNENGCINCRCSPSEPHESANVDESV 56
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIV 570
K++ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 92 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 12
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 446 PLSLHLVAHNQENL--LLQSIE 387
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,972
Number of Sequences: 5004
Number of extensions: 60868
Number of successful extensions: 221
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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