Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060532.seq
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 62 4e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 5e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 57 1e-08
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 48 7e-06
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 46 2e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 43 3e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 42 6e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 41 8e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.002
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 36 0.023
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 36 0.040
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.070
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 33 0.28
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 33 0.28
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 31 0.65
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.86
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.5
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.5
SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05) 28 6.0
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.0
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/90 (35%), Positives = 49/90 (54%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 418
P +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ ++ + Y +PT IQ Q PIA+SG++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRD 556
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
++++G+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTREL 602
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKFSKVA 672
++++G+A+TGSGKTLAY LP + + + P GD P+AL+L PTREL F V+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVS 166
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 269 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 448
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 449 YKEPTPIQAQGWPIAMSGKN 508
++ PTPIQ Q MSG++
Sbjct: 92 FQVPTPIQMQSLSCVMSGRD 111
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +2
Query: 311 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 478
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 550 YILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+ILP IVHIN+QP ++ GDGPI LVL PTRELA
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELA 145
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
QPF K+FY P + K +P E +E+R E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 440 TMGYKEPTPIQAQGWPIAMSGKN*LA---*PKRVPAKRWPTSCQQLC 571
Y++PTPIQAQ P+ MSG++ +A P R A + C++ C
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFC 168
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 538 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
K +Y P + P I G IA+V+ PTRELA
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/91 (30%), Positives = 48/91 (52%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 464 PIQAQGWPIAMSGKN*LA*PKRVPAKRWPTS 556
PIQ Q P+ +SG++ + K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELA 648
++++GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELA
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELA 191
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 335 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRD 140
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 323 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 490
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 491 AMSG 502
G
Sbjct: 197 MAHG 200
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++L+ AQTGSGKT AY+LP + + Q P+AL +APTRELA
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELA 565
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 359 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
VSG I F E F + + + GY+ PTP+Q PI M+G++ +A
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMA 521
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 612
+D G+ +S Y ++++G A+TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 613 IALVLAPTRELA 648
LV+APTRELA
Sbjct: 149 KVLVMAPTRELA 160
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKF 660
++++G A+TGSGKTLA+++P I + Q DG ALV++PTRELA F
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTF 139
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
++ F + G+ G+ PT IQ QG P+A+SG++
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRD 89
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 615
KD G +A ++L+G A+TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 616 ALVLAPTRELA 648
++++PTREL+
Sbjct: 647 VIIISPTRELS 657
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +2
Query: 329 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 509 *LA 517
+A
Sbjct: 751 VMA 753
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELA 648
++++ AQTGSGKT A++LP + + N P A+ +APTRELA
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELA 801
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +2
Query: 329 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 509 *LA 517
+A
Sbjct: 174 VMA 176
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
K+++G+A+TGSGKT A+ LP + + + P AL+L PTRELA
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELA 45
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA--TTKFSK 666
K++V +A+TGSGKT A+++P + G AL+L+PTRELA T KF K
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELALQTQKFIK 372
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++ +G A+TGSGKT A+ LP + + + P G A+VL PTRELA
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELA 88
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVW-KELVGVAQTGSGKTLAYILPAIVHIN-------NQPPI 594
D G + S + + ++ ++++G A+TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 595 -------RRGDGPIALVLAPTRELA 648
+G +AL++APTRELA
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELA 231
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 508 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAT 651
++ AQTGSGKTLAY+ P +VH + R G P A ++ P RELAT
Sbjct: 418 VICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELAT 469
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELA 648
++++ AQ+G+GKT + + + I+ + G D ALVLAPTRELA
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELA 172
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 472 SSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+S + + + K++ A TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELA 94
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 428 QGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ V +G+ PTPIQA P+A+ GK+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKD 49
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 445 GLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 624
G ++ A + ++++ AQ+G+GKT + + + I+ Q +R P ALV
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70
Query: 625 LAPTRELA 648
L+PTRELA
Sbjct: 71 LSPTRELA 78
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.5 bits (78), Expect = 0.040
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = +1
Query: 430 RCKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 609
+ K G+ + L + K L+ ++TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 610 PIALVLAPTRELATTKFSKVA 672
I ++ PTRELA+ +V+
Sbjct: 228 TI--IVVPTRELASQMLYEVS 246
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 627
+++ GVA GSGK LAY+LP I I + +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPP 591
++L+ AQTGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 386 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
I FE+ + + + V GYK+PTP+Q PI ++ +A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++++ A+ G+GKT AY++P + + + ALVL PTRELA
Sbjct: 85 RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELA 128
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++++ A+ G+GKT AY++P + + + ALVL PTRELA
Sbjct: 85 RDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELA 128
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 225 QNMRRPDWDSFHSNLSTKTFMIHILQFSKD 314
+N RR WDSFHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 344 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 499
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 481 LADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
LAD V ++ +Q+G+GKT A++L + ++ P P + L+PT ELA
Sbjct: 138 LADPPV--NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELA 186
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 484
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 317 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 448
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGV+ I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 201 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 91
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 329 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 421
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05)
Length = 243
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 469 SSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 603
S SRL+ + W E V A +GS +P ++ + N PP +RG
Sbjct: 143 SPSRLSSALKWSEKVKEANSGS-------VPMVLVVENIPPSKRG 180
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 225 ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFHGYYSS 82
AL+RI + ++ C +YRR CC L +W H + Y+SS
Sbjct: 197 ALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,670,348
Number of Sequences: 59808
Number of extensions: 446740
Number of successful extensions: 1199
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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