Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060532.seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       52   4e-09
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 52.4 bits (120), Expect = 4e-09
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +2

Query: 350 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++ +A
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA 238



 Score = 29.9 bits (64), Expect = 0.023
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 502 KELVGVAQTGSGKTLAYILPAI 567
           ++L+  AQTGSGKT A+ +P I
Sbjct: 234 RDLMACAQTGSGKTAAFAVPII 255


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 669 NLAEFGCG*LSGR-RQDQSNRTITSPNRRLVIYVHNCW 559
           +LAE   G + G  +Q QS +TIT     +VI    CW
Sbjct: 236 SLAENVEGYVHGETKQVQSRKTITRMLSAVVITFFICW 273


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 248 PIWASHVLPSREFFFP 201
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 82  TGIIAVETVVPNLEEATNSA 141
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 248 PIWASHVLPSREFFFP 201
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 KRSPYEVEEYRNKHEVTV 361
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,048
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)