Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060532.seq
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 99 1e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 2e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 2e-19
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 76 2e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 74 8e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 5e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 59 2e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 5e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 54 9e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 4e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 49 3e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 6e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 48 8e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 48 8e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 47 1e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 47 1e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 2e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 3e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 3e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 46 3e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 45 4e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 45 4e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 45 5e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 44 9e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 41 7e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 7e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 40 0.002
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.002
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 37 0.014
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.019
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.019
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.033
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.043
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 34 0.075
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.23
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.23
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.23
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 32 0.30
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 32 0.30
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 32 0.30
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.30
At2g25460.1 68415.m03049 expressed protein 30 1.2
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.1
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.1
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 2.8
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.8
At5g25520.2 68418.m03037 transcription elongation factor-related... 29 3.7
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 3.7
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 29 3.7
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.9
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 28 6.5
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 28 6.5
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.5
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.5
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.5
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 28 6.5
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 28 6.5
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 99 bits (238), Expect = 1e-21
Identities = 43/89 (48%), Positives = 57/89 (64%)
Frame = +2
Query: 242 RLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 421
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 422 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
V + VK G+ EPTPIQ+QGWP+AM G++
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRD 138
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/49 (71%), Positives = 44/49 (89%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELA 185
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.1 bits (221), Expect = 2e-19
Identities = 38/90 (42%), Positives = 60/90 (66%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 418
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 77.8 bits (183), Expect = 6e-15
Identities = 32/49 (65%), Positives = 44/49 (89%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.1 bits (221), Expect = 2e-19
Identities = 38/90 (42%), Positives = 60/90 (66%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 418
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 77.8 bits (183), Expect = 6e-15
Identities = 32/49 (65%), Positives = 44/49 (89%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 75.8 bits (178), Expect = 2e-14
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELATTKFSKV 669
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL +S +
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
+ Y++P PIQAQ PI MSG++
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRD 435
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 74.1 bits (174), Expect = 8e-14
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 614
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
+ Y++P PIQ Q PI MSG++
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRD 568
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 71.3 bits (167), Expect = 5e-13
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
Y++PT IQ Q PI +SG++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRD 267
Score = 70.5 bits (165), Expect = 9e-13
Identities = 28/49 (57%), Positives = 42/49 (85%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
++++G+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA 314
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LA 517
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELAT
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LA 517
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELAT
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LA 517
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELAT
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELAT 244
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 272 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 440 TMGYKEPTPIQAQGWPIAMSGKN*LA 517
+ G+ PTPIQAQ WPIA+ ++ +A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
+++V +A+TGSGKTL Y++PA + + + R +GP L+LAPTRELAT
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELAT 521
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELA 648
++++G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELA
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELA 402
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +2
Query: 335 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 606
KD G+ L ++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 607 GPIALVLAPTRELATTKFSKV 669
GPIALV+ P+RELA + V
Sbjct: 173 GPIALVICPSRELAKQTYDVV 193
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +2
Query: 281 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 461 TPIQAQGWPIAMSGKN 508
TPIQ QG P+ +SG++
Sbjct: 121 TPIQVQGLPVVLSGRD 136
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELATTKFSKV 669
++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA + V
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/75 (30%), Positives = 42/75 (56%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 464 PIQAQGWPIAMSGKN 508
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELAT
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELAT 315
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 434 VKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V + G+ P+PIQAQ WPIAM ++ +A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 329 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 418
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELA 648
++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELA 204
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 323 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 496
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 497 SGKN 508
G++
Sbjct: 150 DGRD 153
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 612
KD G + + L K+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 613 --IALVLAPTRELAT 651
I LV+ PTRELA+
Sbjct: 458 PIIVLVVCPTRELAS 472
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 433 CKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
CK+ G+++ + + ++++G+AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 613 IALVLAPTRELA 648
ALV+ PTRELA
Sbjct: 128 FALVVTPTRELA 139
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
FE ++ + K +G ++PTP+Q P ++G++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRD 97
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVLAPTRELA 648
++++G A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELA 191
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 520 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTREL 645
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTREL 116
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 430 RCKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRR--- 600
+ K NG++ +S +LVG A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 601 --GDGPIALVLAPTRELA 648
G P LVL PTRELA
Sbjct: 170 GYGRSPSVLVLLPTRELA 187
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGP 612
K G+++ + L + ++++G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 613 IALVLAPTRELA 648
LVLAPTRELA
Sbjct: 192 QCLVLAPTRELA 203
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 615
K+ G R + + + ++++G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 616 ALVLAPTRELATTKFSKVAAE 678
LV+ PTRELA + VA E
Sbjct: 229 VLVICPTRELAIQSYG-VAKE 248
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +1
Query: 457 TDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 636
TD S++ + + ++++G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 637 RELATTKF 660
RELA F
Sbjct: 153 RELAAQTF 160
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 609
KD G + + L K+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 610 PI-ALVLAPTRELA 648
PI ALV+ PTRELA
Sbjct: 130 PILALVICPTRELA 143
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA 648
K+++ A+TG+GKT+A++LP+I + PP R + I LV+ PTRELA
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELA 169
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELATTKFSKVAA 675
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+REL +++V++
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSS 142
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 323 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 503 KN*LA 517
K+ +A
Sbjct: 84 KDVVA 88
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAT 651
++L+ AQTGSGKT A+ P I I ++R G P+A++L+PTRELA+
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELAS 251
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 260 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKN*LA 517
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 648
++L+ AQTGSGKT A+ P I I I R G P+A++L+PTRELA
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELA 237
Score = 34.7 bits (76), Expect = 0.057
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 266 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 443 MGYKEPTPIQAQGWPIAMSGKN*LA 517
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 612
K+ G Q + + K+++G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 613 IALVLAPTRELA 648
+V+ PTRELA
Sbjct: 164 -VIVICPTRELA 174
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Frame = +1
Query: 505 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA--TTKFSK 666
++V +A+TGSGKT A+++P + + P +G G AL+L+PTR+LA T KF+K
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTK 119
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 648
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 648
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 338 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 505
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 506 N*LA*PKRVPAKRWPTSCQQL 568
A K + C L
Sbjct: 180 ECFACAPTGSGKTFAFICPML 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
+E A TGSGKT A+I P ++ + DG A++L+P RELA
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELA 223
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTREL 645
K L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 314 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 487
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 488 IAMSGKN*LA 517
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTREL 645
K L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 356 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = +1
Query: 433 CKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
C+ G ++ ++ + + ++L A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 613 IALVLAPTRELATTKFSKV 669
L+L PTRELA S +
Sbjct: 240 RVLILTPTRELAVQIHSMI 258
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1
Query: 433 CKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI-----NNQPPIR 597
C+ G + + L + K+++G+AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 598 RGDGP--IALVLAPTRELA 648
R P A VL+PTRELA
Sbjct: 84 RRPDPAFFACVLSPTRELA 102
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 442 NGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 609
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 610 PIALVLAPTRELATTKFSKVAAE 678
AL+L PTRELA S++AAE
Sbjct: 406 IFALILCPTRELA----SQIAAE 424
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELATTKFSKVA 672
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL + + KVA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTREL-SAQIHKVA 110
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELATTKFSKVA 672
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL + + KVA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTREL-SAQIHKVA 111
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQ----PPIRR-GDGPIALVLAPTRELA 648
++++ A+TG+GKTLA+ +P I + + RR G P LVLAPTRELA
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 442 NGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 609
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 610 PIALVLAPTRELATTKFSKVAAE 678
L+L PTRELA S++AAE
Sbjct: 453 IFVLILCPTRELA----SQIAAE 471
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELA 648
K +V + TGSGKTLAY+LP IV + + G P +VL PTREL+
Sbjct: 150 KSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELS 202
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 499 WKELVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAT 651
+K++ A TGSGKTLA+++P + + PP + + ++++PTREL+T
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELST 104
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAT 651
K + Q+GSGKTLAY++P I + Q + G P +VL PT ELA+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELAS 465
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
K L+ A GSGKT ++L + ++ P +R P AL + PTRELA
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELA 175
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 35.1 bits (77), Expect = 0.043
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Frame = +1
Query: 490 SYVWKELVGVAQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 624
+Y K+++G A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 625 LAPTRELA 648
+ PTRELA
Sbjct: 285 ITPTRELA 292
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLA 107
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 520 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA--TTKFSKVAA 675
AQTGSGKTL Y+L IN Q A+++ PTREL TK +++ A
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVARMLA 168
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 436 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINN 582
+D+G R + + K+++ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 618
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 619 LVLAPTRELA 648
++L PTRELA
Sbjct: 196 MILVPTRELA 205
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 618
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 619 LVLAPTRELA 648
++L PTRELA
Sbjct: 196 MILVPTRELA 205
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 541
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 618
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 619 LVLAPTRELA 648
++L PTRELA
Sbjct: 226 VILVPTRELA 235
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 383 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 204 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 88
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 615
D+G + + + + +++ A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 616 ALVLAPTRELA 648
ALVL TRELA
Sbjct: 117 ALVLCHTRELA 127
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 439 DNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 615
D+G + + + + +++ A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 616 ALVLAPTRELA 648
ALVL TRELA
Sbjct: 117 ALVLCHTRELA 127
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREFFF 204
VGVK I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHI 576
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 433 CKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI 567
CK NG+ ++ S +A SYV + VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -2
Query: 245 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPVTRH- 72
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 71 -DYFSDLVEDVYLNYGFFLTQGPP 3
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 466 HSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPP 591
H SS DS++ ELV V+ K LA+ ++H ++ P
Sbjct: 37 HLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTP 78
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 275 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 430
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 275 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 430
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 502 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAT 651
++++ AQ+G+GKT L ++ + AL+L+PTRELAT
Sbjct: 73 RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELAT 117
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 461 TPIQAQGWPIAMS 499
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 85 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 231
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,330
Number of Sequences: 28952
Number of extensions: 313680
Number of successful extensions: 1012
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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