Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q12905 Cluster: Interleukin enhancer-binding factor 2; ...   100   4e-20
UniRef50_Q1HQ52 Cluster: Interleukin enhancer binding factor iso...    92   1e-17
UniRef50_Q4T1I1 Cluster: Chromosome undetermined SCAF10575, whol...    68   2e-10
UniRef50_Q5BSH0 Cluster: SJCHGC04322 protein; n=1; Schistosoma j...    57   5e-07
UniRef50_UPI00006C0E17 Cluster: PREDICTED: hypothetical protein;...    33   8.4  
UniRef50_A6VUS7 Cluster: Phosphatidate cytidylyltransferase prec...    33   8.4  
UniRef50_Q9P3E9 Cluster: Related to protein kinase PAK1; n=2; So...    33   8.4  

>UniRef50_Q12905 Cluster: Interleukin enhancer-binding factor 2;
           n=54; Eumetazoa|Rep: Interleukin enhancer-binding factor
           2 - Homo sapiens (Human)
          Length = 390

 Score =  100 bits (239), Expect = 4e-20
 Identities = 45/82 (54%), Positives = 63/82 (76%)
 Frame = +3

Query: 285 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 464
           PFD  L E AFPR KPAPD++  ++ALLKR+ +L P+  +QA++LSLVTK+  V+DN++V
Sbjct: 31  PFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIV 90

Query: 465 APGEFAACQLEEVRQLGPTRRG 530
           APG F   Q+EEVRQ+G  ++G
Sbjct: 91  APGTFEV-QIEEVRQVGSYKKG 111



 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = +2

Query: 509 VGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKV 622
           VGSYKKGTM  G NVAD+VVI+K LPT EAV  L NKV
Sbjct: 105 VGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKV 142


>UniRef50_Q1HQ52 Cluster: Interleukin enhancer binding factor
           isoform 2; n=1; Bombyx mori|Rep: Interleukin enhancer
           binding factor isoform 2 - Bombyx mori (Silk moth)
          Length = 126

 Score = 91.9 bits (218), Expect = 1e-17
 Identities = 44/59 (74%), Positives = 45/59 (76%)
 Frame = +3

Query: 222 PRSGRDGASTLNRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSP 398
           P  G  G    NRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKR      +P
Sbjct: 13  PGRGGMGRPPFNRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKRRRTPAHTP 71


>UniRef50_Q4T1I1 Cluster: Chromosome undetermined SCAF10575, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF10575, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 406

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 19/89 (21%)
 Frame = +3

Query: 285 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQA------------------ 410
           PFD  + E AFPR KP PD++  ++ LLKR+ +L P+P +QA                  
Sbjct: 30  PFDFYVCEMAFPRVKPPPDETAFSECLLKRNQDLSPTPAEQAKPQARHLHARGLFFCCLQ 89

Query: 411 -AVLSLVTKLQTVLDNIVVAPGEFAACQL 494
            ++LSLVTK+  V+DN++VAPG F    L
Sbjct: 90  SSILSLVTKINNVIDNLIVAPGNFEVVSL 118



 Score = 43.6 bits (98), Expect = 0.005
 Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 482 SLPTRRSAAVGSY-KKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKV 622
           S P  R  A G   ++G    G NVAD+VVI+K LPT EAV  L NKV
Sbjct: 138 SPPANRGGASGGLLQEGHHDDGHNVADLVVILKILPTLEAVAALGNKV 185


>UniRef50_Q5BSH0 Cluster: SJCHGC04322 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04322 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 241

 Score = 56.8 bits (131), Expect = 5e-07
 Identities = 31/77 (40%), Positives = 46/77 (59%)
 Frame = +3

Query: 285 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 464
           P D++L EP F    P+ D  +L Q LL  H +L PS   Q A+ +L  ++  +LDNI+V
Sbjct: 25  PLDIILLEPNF--VIPSNDQKLL-QCLLDHHAKLIPSSDSQYALSNLSNRICEILDNIIV 81

Query: 465 APGEFAACQLEEVRQLG 515
            P  F + QL++VR +G
Sbjct: 82  NPSIFESGQLDQVRSVG 98



 Score = 41.5 bits (93), Expect = 0.018
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +2

Query: 506 AVGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKV 622
           +VGS+K  T + G  ++D+  + +TLPT EAVE L+N V
Sbjct: 96  SVGSFKLNTWLNGSCISDLTCVFRTLPTLEAVENLANFV 134


>UniRef50_UPI00006C0E17 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 154

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 318 PRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLS 422
           P+C+P+P      Q L   H    PSP   AA+LS
Sbjct: 116 PKCRPSPSSWPRNQRLHPAHVTAAPSPNPNAALLS 150


>UniRef50_A6VUS7 Cluster: Phosphatidate cytidylyltransferase
           precursor; n=2; Marinomonas|Rep: Phosphatidate
           cytidylyltransferase precursor - Marinomonas sp. MWYL1
          Length = 267

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -3

Query: 652 AFISLFTSSVNLIGESLDSLFRWQGFHDD-HDISNVLPGH 536
           A I+L TSSV+++G+  +SLF+    H++  D S+++PGH
Sbjct: 204 AVIALMTSSVSVLGDLTESLFK---RHEELKDSSHLIPGH 240


>UniRef50_Q9P3E9 Cluster: Related to protein kinase PAK1; n=2;
            Sordariales|Rep: Related to protein kinase PAK1 -
            Neurospora crassa
          Length = 1246

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 276  LRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVT 431
            LR   +   AEPA   C P+P D++ ++A  ++ T +  S T  AA+ S +T
Sbjct: 1001 LRGNHETSSAEPASVPCPPSPGDNMFSRAQSRQGTIVWSSTTSMAALTSPLT 1052


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,816,511
Number of Sequences: 1657284
Number of extensions: 12625261
Number of successful extensions: 32329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32322
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)