Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.82 
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   1.9  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   3.3  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 285 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 464
           P  +L   P  P+    PD + L Q +L+    LC        V  L  + +T+L ++ V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 465 AP 470
            P
Sbjct: 273 NP 274


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 663 PLLQPSSACSPPRLTLLESPSTASFVGKVFMMTTISATFFPAIIVPFL*DP 511
           PL   +S  SP +++   +PST S         +  A  FPA  +PFL  P
Sbjct: 269 PLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQVFPATQMPFLQQP 319


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 514 PNCRTSSSWQAANSPGATTILSNTVCSFVTRL-KTAA*SVG 395
           P   T S+  +A+  G TT  SN+  SF+TRL  TAA S G
Sbjct: 766 PTATTISTTTSAS--GITTTASNSRDSFITRLPPTAALSTG 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,734
Number of Sequences: 5004
Number of extensions: 49966
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)