Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    32   0.49 
09_06_0251 - 21859484-21862162                                         32   0.49 
11_01_0674 - 5502275-5502954,5503054-5504746                           31   1.1  
11_01_0805 - 7166265-7166759                                           30   2.0  
11_01_0673 - 5491694-5493102,5493386-5493995                           28   7.9  
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674...    28   7.9  
01_02_0021 + 10281611-10281997                                         28   7.9  

>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 252 LNRPRVLMLRPPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 419
           L R R +   PP   +L + +FP   PA D  +L   L +RH   C P P     V+
Sbjct: 7   LVRARAVPSAPPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63


>09_06_0251 - 21859484-21862162
          Length = 892

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = -1

Query: 675 FTIAPLLQPSSACSPPRLTLLESPSTASFVGKVFMMTTISAT 550
           F  A LL P SA  PP L L + P T+S +G VF+  + SA+
Sbjct: 103 FRNATLLLPFSAPLPPLLALFD-PDTSSDLGHVFLPVSASAS 143


>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 643 SLFTSSVNLIGESLDSLFRWQGFHDDHDISNVLPG 539
           ++   S NL+ ESL  ++ WQ F D  D+  VLPG
Sbjct: 148 AILLDSGNLVIESLSDVYLWQSFDDATDL--VLPG 180


>11_01_0805 - 7166265-7166759
          Length = 164

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 249 TLNRPRVLMLRPPFDLLLAEPAFPRCKP--APDDSVLTQALLKRHTELCPSPTDQAAVLS 422
           T +RP++  +RP    LLA  A P   P  +P  S   Q +     EL PSPT  ++ L+
Sbjct: 60  TPHRPKLPTIRPEHPRLLAGFASPPSPPSLSPWCSGAGQCVQNMQDELPPSPTSASSTLA 119


>11_01_0673 - 5491694-5493102,5493386-5493995
          Length = 672

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 643 SLFTSSVNLIGESLDSLFRWQGFHDDHDISNVLPG 539
           ++   S NL+ ESL  ++ WQ F  D+    VLPG
Sbjct: 159 AILLDSGNLVIESLPDVYLWQSF--DYPTELVLPG 191


>10_08_0851 -
           21065832-21065948,21066361-21066705,21067181-21067489,
           21067574-21067648,21067754-21067917,21067994-21068432
          Length = 482

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 260 TPSLDASSALRPFTSRTRFS*MQTGSRRLRAHSGP 364
           TPS+DA +  R F+  + FS    GS     HSGP
Sbjct: 27  TPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61


>01_02_0021 + 10281611-10281997
          Length = 128

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 398 YRSSSCFEPRHETADSIRQYCCGSGRICSLPTRRSAAVGSYKKGTMMAGKNVA 556
           + SS    P   +   IR   CGS     L +  S AVG ++ G+  AG   A
Sbjct: 23  WASSMLDLPSPASRVQIRHQACGSAGAAGLGSGGSVAVGPHEHGSSAAGPREA 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,726,425
Number of Sequences: 37544
Number of extensions: 371284
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)