Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 56   2e-08
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)          31   1.1  
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)                  28   6.0  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   6.0  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
 Frame = +3

Query: 225 RSGRDGASTLNRPRVLMLRP--PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSP 398
           R GR G     RP   M  P  P   +++   F        D +L  ALLKR+T+L PS 
Sbjct: 341 RMGRGGRGGPGRPMPYMRGPMGPQRFIVSHATF--------DPIL--ALLKRNTKLTPSQ 390

Query: 399 TDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQLGPTRRG 530
            +QA V +LVTK+ +VLDN++V P + A   +EEVR +G  ++G
Sbjct: 391 QEQALVQNLVTKVTSVLDNLIVDP-DTAEFGVEEVRAVGSHKKG 433



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 506 AVGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKVNRGGEQ 640
           AVGS+KKGTM+ G  +AD+ VI+K LPT   ++      N  G +
Sbjct: 426 AVGSHKKGTMLLGHPIADLTVILKRLPTDFPMQANEGGFNISGTE 470


>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
          Length = 922

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 390 PSPTDQAAVLSLVTKLQTVLD-NIVVAPGE--FAACQLEEVRQLGPTRRGQ*W 539
           PS   Q  + SLVTK++T  D N++V  G+   +   LEEVR+ G T  G+ W
Sbjct: 345 PSTGYQTKIASLVTKIKTANDVNVIVLWGDPTTSIAFLEEVRKQGVT--GKTW 395


>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
          Length = 807

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/72 (22%), Positives = 24/72 (33%)
 Frame = +2

Query: 353 HSGPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYCCGSGRICSLPTRRSAAVGSYKKGT 532
           H+G     H    V      C        D    +CC  GR+C         + ++  GT
Sbjct: 389 HAGKHVIEHEGYRVMRCKLKCIRANGRVTDCSHYHCCLCGRVCLRKVHLCCHLQAHALGT 448

Query: 533 MMAGKNVADIVV 568
                +V D V+
Sbjct: 449 AKVVDDVNDDVM 460


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 285 PFDLLL-AEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTV 446
           PF L++ AE    R KPAP        +   H  L P P     + S+V K Q V
Sbjct: 417 PFALVMEAEREHARAKPAPVQDRNEAKITTEHVRLTPVPGIVVKIESMVDKPQFV 471


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 PSPTDQAAVLSLVTKLQTVLDNIVVAPGEF 479
           PSP      L  VT ++ +LD +  +PGEF
Sbjct: 48  PSPQTTGPDLEAVTFVKDILDQLTESPGEF 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,393
Number of Sequences: 59808
Number of extensions: 404906
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)