Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical pr...    31   1.00 
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    29   3.0  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    28   7.0  
Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z50872-3|CAA90756.1|  238|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    27   9.3  

>Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical
           protein R11H6.5 protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 509 VGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKVNRGGEQAD 646
           VGS+   T     + +D+VV + TLP+ E V  L  KV    + AD
Sbjct: 93  VGSFVTDTTTHSSDKSDVVVQLSTLPSYETVAELGRKVVENMKIAD 138


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 186 NGARHRSWWTRYPRSGRDGASTLNRPRVLMLRPPFDLLLAEPAFP 320
           +G  +++ WTRYP S  +   T++ PR  +L    +L++ +   P
Sbjct: 109 DGWHYKTGWTRYPFSTSEPPETIDFPRDSILFFDIELVVRDGTLP 153


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 414 VLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQLGPTRRGQ 533
           V SLVTK+Q + D + V   EF A      R+L   RRG+
Sbjct: 28  VPSLVTKIQNINDQLKVDSEEFRAMADYTWRELITMRRGK 67


>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 297 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 476
           LLA P     +P P    +  + L+  T +  SPTD   +  LVT    +   +++ P +
Sbjct: 17  LLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVD 76

Query: 477 FAACQLEEVR 506
             +   E VR
Sbjct: 77  ARSISREIVR 86


>Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical
           protein F56H9.4 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 32  RKCPINTIRTLYKLVRNNN*RKIRENTTSMSLTFQVQ 142
           R C +  IR  +  + NN  RKI ++ TS + T ++Q
Sbjct: 334 RDCALEYIRVQFISLNNNKNRKIYQHVTSATDTARIQ 370


>Z50872-3|CAA90756.1|  238|Caenorhabditis elegans Hypothetical
           protein C05D12.5 protein.
          Length = 238

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 21  IETAESVRLIQ--FEHYISSCVTIIKEKLEKTQL 116
           +ETAES R ++    H  + C+T++KE +E  +L
Sbjct: 154 LETAESKRKLKERINHMETHCMTMLKETMEDNKL 187


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 318 PRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQT-VLDNIVVAPGEFAACQL 494
           P C+PA D+S  +Q     + +   +    A V+ +V  LQT V  +   AP    +CQ 
Sbjct: 270 PACQPACDNSCTSQQTQPMYQQYDTTTEAPAQVIQIV--LQTSVAQSSQCAPQCEQSCQQ 327

Query: 495 EEVRQLGPTRRGQ 533
           + V+Q  P  + Q
Sbjct: 328 QCVQQQQPAAQCQ 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,415
Number of Sequences: 27780
Number of extensions: 302095
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)