Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060531.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15730.1 68417.m02394 expressed protein                             31   0.70 
At5g61340.1 68418.m07697 expressed protein                             29   2.8  
At4g27810.1 68417.m03995 hypothetical protein                          28   4.9  
At3g21055.1 68416.m02661 photosystem II 5 kD protein, putative i...    28   4.9  
At5g53440.1 68418.m06641 expressed protein                             28   6.5  

>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 407 SSCFEPRHETADSIRQYCCGSGRICSLPTRRSAAV-GSYKKGTMMAGKNVADIVVIMKTL 583
           + CF+       S R +  GSG+I  + T  S+ V GS+K G M   +  A  V  + + 
Sbjct: 743 ADCFQEHLNGDASCRYFSGGSGQISGIETSNSSKVLGSHKSGRMYVEEVKASPVESVSSS 802

Query: 584 PTKEA 598
           P + +
Sbjct: 803 PARSS 807


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 637 FTSSVNLIGESLDSLFRWQGFHDDHDISNVL 545
           F+SS + +   L+ LFR  GF   HD  N+L
Sbjct: 47  FSSSSSTLHMRLNMLFRGAGFSSSHDFFNIL 77


>At4g27810.1 68417.m03995 hypothetical protein 
          Length = 182

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 359 GPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYCCGSGRICSLPTRRSAAVGS 517
           GP     R++SV  RS    E R E + S    CC  G   ++   R    GS
Sbjct: 104 GPYDVPRRSLSVIRRSERASEGRFEFSRSTNSRCCDGGGGTTVKISRVRRKGS 156


>At3g21055.1 68416.m02661 photosystem II 5 kD protein, putative
           identical to Swiss-Prot:Q39195 photosystem II 5 kDa
           protein, chloroplast precursor (PSII-T) [Arabidopsis
           thaliana]
          Length = 103

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +2

Query: 362 PSKEAHRAMSVTYRSSS----CFEPRHETADSIRQ---YCCGSGRICSLPTRRSAAVGSY 520
           PS    R +SV   S+S      E + +++ ++R+   +   +  +CSL     A     
Sbjct: 18  PSATGGRRLSVVRASTSDNTPSLEVKEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEP 77

Query: 521 KKGTMMAGKNVADIVVIMKT 580
           K+GT  A K  A + V M T
Sbjct: 78  KRGTEAAKKKYAQVCVTMPT 97


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 356 SGPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYC 460
           + P+KE H +   T    +  +P  ET D+  +YC
Sbjct: 820 TSPAKELHASSPKTMEEVAADDPVSETIDNTERYC 854


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,612
Number of Sequences: 28952
Number of extensions: 280280
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)