Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060529.seq
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 31 0.20
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 29 0.80
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 1.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 1.4
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 2.4
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 4.3
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 7.5
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.9
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.9
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -3
Query: 197 RFILVLFLFHFEHDCFRIS-VVRHLYIR----IFKILLYALYNDYLINYLFTYVF 48
RF+ L L H D R++ +V + + + F + Y +YN++ NYLF Y +
Sbjct: 1049 RFLSKLVLVHGRWDYNRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANYLFDYTY 1103
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.7 bits (61), Expect = 0.80
Identities = 28/95 (29%), Positives = 37/95 (38%)
Frame = +2
Query: 245 LIKSSNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNP 424
L K S DS+ +EK S V + E W + S D+ P D +K + S P
Sbjct: 122 LKKLSMKDSQPSLEKPVSYVDEPILEQWALSDLQILPPSSTDLLSP-DSQKLSKSSSDLP 180
Query: 425 STSSRELNPYWKDGGSGLPQTPESFRKADLSSNHL 529
LN S LP + F K LS + L
Sbjct: 181 QFDYPSLNSS-PTFNSNLPISSSRFEKTSLSDSKL 214
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 248 IKSSNSDSEQWVEKESSIVQKETREDWM 331
I SSN + E + S+ QK+TR W+
Sbjct: 285 IISSNREEESFYSVHDSVTQKKTRTSWL 312
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -3
Query: 188 LVLFLFHFEHDCFRISVVRHLYIRIFKILLYALYNDYLINYLFTYVFYDF 39
L +FL HF CF + V+++ + +LL YN Y+I +LF F+ +
Sbjct: 200 LRIFL-HFLRSCFYL--VQYI-VAYIAMLLAMYYNGYVILFLFCGTFFGY 245
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 308 KETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRE 442
KET L ++Y K + + + +NG+D + P TS+++
Sbjct: 52 KETANVCPISKNLFQSYPKGSYRNSQRLTSRNGLDRFIPMTSNKD 96
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 272 EQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPS 427
EQW++ +S ++ + + GLL SK+ K R+ +K + DS N S
Sbjct: 470 EQWLKDKSKKARRRAEREKLRSEGLLGKKSKK--KLLRESQKPSSSDSDNAS 519
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 188 LVLFLFHFEHDCFRISVVRHLYIRIFKILLYALYNDYLINYLFTYVFYDFSC 33
+V +LF F I V+ L R+ I + L+ND N LF+ +F SC
Sbjct: 119 IVGYLFKIVRAPFYIYVLLILSKRLHSIFILRLFNDG-FNSLFSSLFILSSC 169
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 416 YNPSTSSRELNPYWKDGGSGLPQTPESFRKADLSSN 523
+NP +P ++G S + P S ++ DLSSN
Sbjct: 92 FNPFEFLEATSPLQQNGKSRDTEKPPSMKEKDLSSN 127
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 233 CFFFTLKLFRLMRFILVLFLFHFEHDCFRISVVRHL 126
CFFF LF F+ F+F FR+ +HL
Sbjct: 109 CFFFYFSLFSFFSFLFTSLHFNF---FFRLCRHKHL 141
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 431 SSRELNPY-WKDGGSGLPQTPESFRKADLSSNHLKKMTTIHYLLEV 565
S E++P +K GG+ TPE+ + + N K ++T + +L++
Sbjct: 579 SKDEIHPRGYKCGGNERNLTPEATSEIEREKNESKDISTFNIILDL 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,811
Number of Sequences: 5004
Number of extensions: 41373
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -