Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060529.seq
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634     32   0.36 
03_06_0195 + 32256771-32258792                                         31   1.1  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    31   1.1  
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558...    30   1.5  

>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
          Length = 369

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 362 KQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDG 466
           K+++K  RDV  KNG+ S    T +  + P WK G
Sbjct: 200 KKEVKYTRDVVAKNGLVSKKEETKTIRVKPGWKKG 234


>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 266 DSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVK--KKNGIDS 415
           D+E + E+ES + Q +  E+W   TG+  +Y+  D     ++   K + IDS
Sbjct: 318 DNESFGEEESCMEQSDAEEEWPEFTGVPVSYNDIDTDSDMEIDGGKYDDIDS 369


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 377 PPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
           P  D  K N I    P T + EL P W+DG +G P
Sbjct: 333 PNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYP 367


>06_03_0383 -
           20154045-20154712,20154969-20155122,20155780-20155896,
           20157395-20157466
          Length = 336

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 458 KDGGSGLPQTPESFRKAD-LSSNHLKKMTTIHYLLEVIXSDYHHSKXYENRSPSXAEQ 628
           K G  G  Q P S    D +  NHL+  +  H+L E I  D+H S   + RSP   ++
Sbjct: 189 KKGEGGGDQQPWSPGVPDPVVPNHLETGSGAHHL-EAITGDHHRSSGTKKRSPELRDE 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,551
Number of Sequences: 37544
Number of extensions: 230049
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)