Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060529.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           29   2.6  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       29   3.4  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   29   4.5  
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 37/133 (27%), Positives = 50/133 (37%)
 Frame = +2

Query: 155 NHVQNEREKAQE*IS*AERA*E*KKSTYY*LIKSSNSDSEQWVEKESSIVQKETREDWMA 334
           N+  NE+  A+E  S  + A   KK  Y     SS+    + VE+E    +      W  
Sbjct: 31  NNNSNEKLTAREGGSGRKNAAN-KKGIYR---TSSHDHVRKLVEQEGRTARNLVT--WSV 84

Query: 335 MTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLPQTPESFRKADL 514
                ++  K     PR   +K         +S RE +P  K GGS  P    S RK  L
Sbjct: 85  PVSTSQSEEKPKRTKPRVTARKRYSTPDKSGSSEREGSPVTK-GGSKSPNRGRSSRKTSL 143

Query: 515 SSNHLKKMTTIHY 553
           SS   K      Y
Sbjct: 144 SSTGRKSDLRARY 156


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/90 (23%), Positives = 33/90 (36%)
 Frame = +2

Query: 263  SDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRE 442
            SD E W EKE  + + E +E W    G +    K+  K       ++  + +       +
Sbjct: 1138 SDKEGWKEKEGEVDESE-KEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKTEGEGEK 1196

Query: 443  LNPYWKDGGSGLPQTPESFRKADLSSNHLK 532
                WK    G  +  E     D S +H K
Sbjct: 1197 TEEEWKKEVEGQREEKED----DKSDSHTK 1222


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 323 DWMAMTGLLKT--YSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLPQTPES 496
           D  A  GL +T  +S  +++  +DVK K+G+++  PS +  E  P W       P   +S
Sbjct: 122 DSAAANGLHETGSFSTPELES-KDVKSKDGLETLIPSKNGGESAPLWSQRQELHPPLSDS 180

Query: 497 FRKADLSSNH 526
             +A   + H
Sbjct: 181 PCQAPRYNGH 190


>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 284 EKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNP 424
           E++ S + ++  ED           +K+  K PR  KKK G + Y+P
Sbjct: 406 ERQGSEIDEDVSEDGEPSQRKRSKGAKKGTKKPRVPKKKEGEEGYDP 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,278
Number of Sequences: 59808
Number of extensions: 278249
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)