Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060529.seq
(670 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC118669-1|AAI18670.1| 740|Homo sapiens CWF19-like 2, cell cycl... 41 0.003
BC110442-1|AAI10443.2| 740|Homo sapiens CWF19-like 2, cell cycl... 41 0.003
BC110441-1|AAI10442.1| 518|Homo sapiens CWF19L2 protein protein. 41 0.003
BC110440-1|AAI10441.1| 603|Homo sapiens CWF19L2 protein protein. 41 0.003
BC110439-1|AAI10440.1| 588|Homo sapiens CWF19L2 protein protein. 41 0.003
AK056905-1|BAB71307.1| 740|Homo sapiens protein ( Homo sapiens ... 41 0.003
L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein. 33 1.2
BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongatio... 33 1.2
AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongatio... 33 1.2
BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein. 30 6.5
AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial spokehead... 30 6.5
AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA seq... 30 6.5
>BC118669-1|AAI18670.1| 740|Homo sapiens CWF19-like 2, cell cycle
control (S. pombe) protein.
Length = 740
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>BC110442-1|AAI10443.2| 740|Homo sapiens CWF19-like 2, cell cycle
control (S. pombe) protein.
Length = 740
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>BC110441-1|AAI10442.1| 518|Homo sapiens CWF19L2 protein protein.
Length = 518
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>BC110440-1|AAI10441.1| 603|Homo sapiens CWF19L2 protein protein.
Length = 603
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>BC110439-1|AAI10440.1| 588|Homo sapiens CWF19L2 protein protein.
Length = 588
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>AK056905-1|BAB71307.1| 740|Homo sapiens protein ( Homo sapiens
cDNA FLJ32343 fis, clone PROST2006260, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 740
Score = 41.1 bits (92), Expect = 0.003
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 323 DWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLP 481
D+M++ + + K + + R ++++ RELNPYWKDGG+GLP
Sbjct: 4 DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGLP 56
>L47345-1|AAA75492.1| 772|Homo sapiens elongin A protein.
Length = 772
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 293 SSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGS 472
SS+ +K A LK +D + + K K G+DS++ + +L P K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366
Query: 473 GLPQTPESFRKADLSSNHLKKMTTI 547
+TPE K +L L + +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391
>BC002883-1|AAH02883.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 293 SSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGS 472
SS+ +K A LK +D + + K K G+DS++ + +L P K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366
Query: 473 GLPQTPESFRKADLSSNHLKKMTTI 547
+TPE K +L L + +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391
>AL031295-2|CAB40157.1| 772|Homo sapiens transcription elongation
factor B (SIII), polypeptide 3 (110kDa, elongin A)
protein.
Length = 772
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 293 SSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGS 472
SS+ +K A LK +D + + K K G+DS++ + +L P K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366
Query: 473 GLPQTPESFRKADLSSNHLKKMTTI 547
+TPE K +L L + +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391
>BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein.
Length = 600
Score = 30.3 bits (65), Expect = 6.5
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 284 EKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWK- 460
EKE+ ETR W T YS+ + P ++ K G ++ S SSR +P +
Sbjct: 10 EKENQEELGETRRPWEGKTAASPQYSEPESSEP--LEAKQGPETGRQSRSSRPWSPQSRA 67
Query: 461 DGGSGLPQTPESFRKADLS 517
G P PE+ A +S
Sbjct: 68 KTPLGGPAGPETSSPAPVS 86
>AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial
spokehead-like 1, a novel ).).
Length = 716
Score = 30.3 bits (65), Expect = 6.5
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 284 EKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWK- 460
EKE+ ETR W T YS+ + P ++ K G ++ S SSR +P +
Sbjct: 10 EKENQEELGETRRPWEGKTAASPQYSEPESSEP--LEAKQGPETGRQSRSSRPWSPQSRA 67
Query: 461 DGGSGLPQTPESFRKADLS 517
G P PE+ A +S
Sbjct: 68 KTPLGGPAGPETSSPAPVS 86
>AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA
sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
Contains a gene similar to murine radial spokehead-like
1, a novel ).
Length = 469
Score = 30.3 bits (65), Expect = 6.5
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 284 EKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPSTSSRELNPYWK- 460
EKE+ ETR W T YS+ + P ++ K G ++ S SSR +P +
Sbjct: 10 EKENQEELGETRRPWEGKTAASPQYSEPESSEP--LEAKQGPETGRQSRSSRPWSPQSRA 67
Query: 461 DGGSGLPQTPESFRKADLS 517
G P PE+ A +S
Sbjct: 68 KTPLGGPAGPETSSPAPVS 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,253,962
Number of Sequences: 237096
Number of extensions: 1323133
Number of successful extensions: 2826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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