Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060529.seq
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82072-2|CAB04921.1|  329|Caenorhabditis elegans Hypothetical pr...    31   0.74 
Z81029-8|CAB02702.1|  329|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p4...    28   5.2  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   9.1  

>Z82072-2|CAB04921.1|  329|Caenorhabditis elegans Hypothetical
           protein W05H12.2 protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 230 FFFTLKLFRLMRFILVLFLFHFEHDCFRISVVRHLYIRIFKILLYALYNDYLINYLFTYV 51
           +FF   +FR + F  +L      HD   I + +HL   I   L+Y +Y     N+    +
Sbjct: 5   YFFQKHIFRAIFFRKLLLCHQQHHDTSTIDMFKHLE-TIIIFLIYPIYTTLDFNWNKENI 63

Query: 50  FY 45
           FY
Sbjct: 64  FY 65


>Z81029-8|CAB02702.1|  329|Caenorhabditis elegans Hypothetical
           protein W05H12.2 protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 230 FFFTLKLFRLMRFILVLFLFHFEHDCFRISVVRHLYIRIFKILLYALYNDYLINYLFTYV 51
           +FF   +FR + F  +L      HD   I + +HL   I   L+Y +Y     N+    +
Sbjct: 5   YFFQKHIFRAIFFRKLLLCHQQHHDTSTIDMFKHLE-TIIIFLIYPIYTTLDFNWNKENI 63

Query: 50  FY 45
           FY
Sbjct: 64  FY 65


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 230 FFFTLKLFRLMRFILVLFLFHFE-HDCFRISVVRHLYIRIFKILLYALYN 84
           F   + LF +MRF+L L L   +  +C+   ++R+  I +F IL +A YN
Sbjct: 9   FMNNIFLFEIMRFLLFLQLLKMQKSNCYSTKLIRYNII-VFIILFFA-YN 56


>AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p450
           family protein 29A3 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 224 KKSTYY*LIKS--SNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKK 397
           KK  Y+ ++K+   N  +E+   +ES  V+KET +  M    +L +  +  +  P D+++
Sbjct: 243 KKDEYFNIMKTFTRNVIAERRTARESGEVEKETSKRNMNFLDILLSNEESSVLSPEDLRQ 302

Query: 398 K 400
           +
Sbjct: 303 E 303


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +2

Query: 248 IKSSNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPS 427
           + SS S S +   K +S  ++E  ++        KT S++     +  ++   + S    
Sbjct: 1   MSSSRSQSPE-TPKAASEEREEEEKESSEQPDTPKTSSEKSASRSQSPRESREV-SQETE 58

Query: 428 TSSRELNPYWKDGGSGLPQTPESFRKADLS 517
           TS  +     KD G   P TP S+R  + S
Sbjct: 59  TSENQEKIKEKDDGDDQPGTPNSYRSRETS 88


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 392 KKKNGIDSYNPSTSSRELNPYWKDGGSGL 478
           K+ N  ++ N  T+  E  P W+DGG G+
Sbjct: 196 KRLNKENAPNDPTAVTECKPLWEDGGLGI 224


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +2

Query: 248 IKSSNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKKNGIDSYNPS 427
           + SS S S +   K +S  ++E  ++        KT S++     +  ++   + S    
Sbjct: 1   MSSSRSQSPE-TPKAASEEREEEEKESSEQPDTPKTSSEKSASRSQSPRESREV-SQETE 58

Query: 428 TSSRELNPYWKDGGSGLPQTPESFRKADLS 517
           TS  +     KD G   P TP S+R  + S
Sbjct: 59  TSENQEKIKEKDDGDDQPGTPNSYRSRETS 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,340,575
Number of Sequences: 27780
Number of extensions: 224419
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)