Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060529.seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    39   0.003
At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing pr...    34   0.074
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ...    29   3.7  
At5g65687.1 68418.m08267 transporter-related low similarity to s...    28   6.5  
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t...    27   8.5  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    27   8.5  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    27   8.5  

>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +2

Query: 170 EREKAQE*IS*AERA*E*KKSTYY*LIKSSNSDSEQWVEKESSIVQKETREDWMAMTGLL 349
           +R +  + ++  ER  E  K     + KS + ++      E  IV+K+   DWM     L
Sbjct: 30  DRRRKNKDVNRKERRGEGSKRDGKKIAKSGDGETVDDDLLEGDIVRKKMGLDWM-----L 84

Query: 350 KTYSKQDIKPPRDVKKKNGIDSYNPS-TSSRELNPYWKDGGSGLPQTPESFRK 505
               K D  P  DV+ K    +   +  + RELNPY K+ G+G P+  ES +K
Sbjct: 85  PPTRKADPNPASDVEDKFEESAPEVTKVNPRELNPYLKENGTGYPE-EESEKK 136


>At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 186

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 371 IKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLPQTPESFRKADLSSNHLKKMTTIH 550
           ++ P + +KK G+    P+    + +  W     GLP+TP+ F+++ +      KM T +
Sbjct: 55  LEDPFNCQKKQGMSCEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYY 114

Query: 551 Y 553
           +
Sbjct: 115 F 115


>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 365 QDIKPPRDVKKKNGIDSYN-PSTSSRELNP--YWKDGGSGLPQTPESFRKADLSSNHLKK 535
           +++K  RD  K      +  P    R ++   YW+   S + Q  +S  +  L      K
Sbjct: 59  EEVKRVRDQSKHGDTSKFTRPKLQPRNISRSRYWRSRRSAIAQAHDSLLRNALKGEKYIK 118

Query: 536 MTTIHYLL 559
           + + HYL+
Sbjct: 119 LYSFHYLI 126


>At5g65687.1 68418.m08267 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003976,  GI:12003972, GI:12003974,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 371 IKPPRDVKKKNGIDSYNPSTSSRELNPYWKDGGSGLPQTPESFRKADLSSNHLKKM 538
           IKPP+ +K     DS  PSTS   + P   +      +TP+S     L    LK +
Sbjct: 219 IKPPQQLKGFADKDSKKPSTSIETVAPTDAEASQIKTKTPKSKNLVVLFGKDLKAL 274


>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
           Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
           II gene enhancer-binding protein)(RIPE3B-binding complex
           3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
           identical to putative helicase (atpc-2 gene) cDNA
           NCBI_gi:11191230
          Length = 639

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 500 RKADLSSNHLKKMTTIHYLLEVIXSDYHHSKXYENR 607
           R ADL  + +K M T+ Y +  +  ++   + Y+N+
Sbjct: 419 RLADLYGDEIKSMLTVQYRMHELIMNWSSKELYDNK 454


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 248  IKSSNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKK 400
            +++S+ D E   EK  S     TR+    ++G+ K Y KQ  K  ++ ++K
Sbjct: 1099 MRNSSEDEECMTEKRCSHYSTATRDIEKTISGIKKKYKKQVQKLVQEHEEK 1149


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 248  IKSSNSDSEQWVEKESSIVQKETREDWMAMTGLLKTYSKQDIKPPRDVKKK 400
            +++S+ D E   EK  S     TR+    ++G+ K Y KQ  K  ++ ++K
Sbjct: 1099 MRNSSEDEECMTEKRCSHYSTATRDIEKTISGIKKKYKKQVQKLVQEHEEK 1149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,030
Number of Sequences: 28952
Number of extensions: 203303
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)