Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060528.seq
         (524 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DBD7 Cluster: At5g46220; n=4; core eudicotyledons|Rep...    40   0.046
UniRef50_Q2GUB0 Cluster: Putative uncharacterized protein; n=1; ...    33   3.0  

>UniRef50_Q6DBD7 Cluster: At5g46220; n=4; core eudicotyledons|Rep:
           At5g46220 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 462

 Score = 39.5 bits (88), Expect = 0.046
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 436 EIGLKPRSSSXRVCPTELSPSVTVXMXNGXRNCCFXTQMFGXTSSYXGRGRIXFCHLKGH 257
           E GLKP SSS    PT++  +  +   +G R+  F   MF    ++  R ++ F  ++ H
Sbjct: 326 EHGLKPWSSSKLPYPTDVPDTALILRRHGIRSNLFSCFMFNELEAFNPRDQLAFAFVRDH 385

Query: 256 LNRQAR 239
           +N + +
Sbjct: 386 INPKVK 391


>UniRef50_Q2GUB0 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 763

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 282 SXFATSRAI*IG-RPGLSSXLXHLPQXPITATTLPWPFPADLXSHSPS 142
           S +ATS A+  G  P  +S   HLPQ P++   LP+  P  L + +PS
Sbjct: 631 SRWATSFALQPGPHPSRTSSPPHLPQEPLSQLPLPFTLPLTLPTPTPS 678


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,028,288
Number of Sequences: 1657284
Number of extensions: 8592363
Number of successful extensions: 15433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15432
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)