Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060528.seq
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0136 - 13849051-13849181,13850649-13851047,13851372-138514...    30   0.99 
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    28   4.0  
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    28   5.3  
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522     28   5.3  
11_04_0134 - 13812569-13812699,13814167-13814565,13814890-138149...    27   9.2  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    27   9.2  

>11_04_0136 -
           13849051-13849181,13850649-13851047,13851372-13851463,
           13851723-13851928,13852041-13852133,13852261-13852317,
           13852410-13852538,13882612-13882707
          Length = 400

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = -2

Query: 493 NXQLXECRTEGFSGSHR----EYEIGLKPRSSSXRVCPTELSPSVTVXMXNGXRNCCF 332
           N Q   C   GF+G+++    EY+    P  +    C  E + ++ +      RNC F
Sbjct: 212 NGQFSSCMLRGFNGTYKYNGEEYDAAASPEGADHGKCGEEAAAALGLDAPCESRNCSF 269


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 78  KSVAEKSLSECGKIVAVNAVNKRDYGXLNL 167
           K    K+L  CG ++A+N ++ +D+G  N+
Sbjct: 288 KEQTSKTLGGCGHLLAINYLDFKDFGIRNI 317


>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 299 RRPGKNRILPPQGPFESAGQVYLRNXHIYHXHR*RQQPYL 180
           R PG+N+ L P G F     + +++ H++      ++P L
Sbjct: 718 RLPGENKPLRPPGAFRKKSDLSVKDGHVFLMEYCEERPLL 757


>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
          Length = 252

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 393 GQTRXLELLGFNPISYSR-WEPENPSVRHSXNC--XFGRNPIXTSRG 524
           G+ R  E    N +   + WE   P +R S NC    G +P+ TS G
Sbjct: 193 GKDRQSEAASPNQVQKKKIWESVQPHLRTSENCTAFLGEHPMRTSAG 239


>11_04_0134 -
           13812569-13812699,13814167-13814565,13814890-13814981,
           13815241-13815446,13815559-13815651,13815779-13815835,
           13815928-13816056,13819704-13820024
          Length = 475

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -2

Query: 493 NXQLXECRTEGFSGSHR----EYEIGLKPRSSSXRVCPTELSPSVTVXMXNGXRNCCF 332
           N Q   C    F+G+++    EY+    P  +    C  E + ++ +      RNC F
Sbjct: 287 NGQFSSCMLREFNGTYKYNGEEYDAAASPEGADHGKCGEEAAAALGLDAPCESRNCSF 344


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 140 QEGLWLXKSAGKGQGKVVAVIGXCGRCXNXEDKPGLPIQMALEVAKXD 283
           Q+ + L   AG  + K+VA +G    C    D P  P+  +L+    D
Sbjct: 424 QKTVILDADAGNHKRKIVAFVGGLDLCGGRYDTPTHPLFRSLQTLHKD 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,368
Number of Sequences: 37544
Number of extensions: 250855
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)