Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060528.seq
         (524 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029106-1|ABJ17039.1|  419|Drosophila melanogaster IP14717p pro...    31   0.96 
AE014297-3400|AAF56200.1|  513|Drosophila melanogaster CG13597-P...    31   0.96 
AE014134-1918|AAN10758.1|  185|Drosophila melanogaster CG6138-PA...    29   2.9  
AE014134-1917|AAF52975.1|  510|Drosophila melanogaster CG6138-PB...    29   2.9  

>BT029106-1|ABJ17039.1|  419|Drosophila melanogaster IP14717p
           protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 246 RPGLSSXLXHLPQXPITATTLPWPFPADLXSHSPS 142
           RP L S    LP  P+   TLPWP PA + S + S
Sbjct: 267 RP-LDSLAAPLPSPPMEPMTLPWPTPAPVESPASS 300


>AE014297-3400|AAF56200.1|  513|Drosophila melanogaster CG13597-PA
           protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 246 RPGLSSXLXHLPQXPITATTLPWPFPADLXSHSPS 142
           RP L S    LP  P+   TLPWP PA + S + S
Sbjct: 267 RP-LDSLAAPLPSPPMEPMTLPWPTPAPVESPASS 300


>AE014134-1918|AAN10758.1|  185|Drosophila melanogaster CG6138-PA,
           isoform A protein.
          Length = 185

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 40  GQ*VELEAAF*PLNQLLRNPFQNVEKSLQSMPLTR 144
           GQ +E+  +F  L +LLR     VE+SL+SMP ++
Sbjct: 26  GQLLEMRESFKTLQKLLRRSSLPVEESLRSMPRSK 60


>AE014134-1917|AAF52975.1|  510|Drosophila melanogaster CG6138-PB,
           isoform B protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 40  GQ*VELEAAF*PLNQLLRNPFQNVEKSLQSMPLTR 144
           GQ +E+  +F  L +LLR     VE+SL+SMP ++
Sbjct: 26  GQLLEMRESFKTLQKLLRRSSLPVEESLRSMPRSK 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,858,997
Number of Sequences: 53049
Number of extensions: 413871
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1949978112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)