Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060528.seq
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -2

Query: 493 NXQLXEC--RTEGFSGSHREYEIGLKPRSSSXRVCPTE 386
           N  L  C  R  G   SH  Y + L P   S R CPT+
Sbjct: 614 NGALQSCSERDGGCPSSHECYGVSLGPDMMSYRCCPTK 651


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 146 PLVNGIDCNDFSTF 105
           PLVNG+ C D STF
Sbjct: 594 PLVNGLACKDLSTF 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,791
Number of Sequences: 27780
Number of extensions: 198647
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)