Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060528.seq
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    40   0.001
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    30   1.1  
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    29   2.5  
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1...    27   7.7  

>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 436 EIGLKPRSSSXRVCPTELSPSVTVXMXNGXRNCCFXTQMFGXTSSYXGRGRIXFCHLKGH 257
           E GLKP SSS    PT++  +  +   +G R+  F   MF    ++  R ++ F  ++ H
Sbjct: 329 EHGLKPWSSSKLPYPTDVPDTALILRRHGIRSNLFSCFMFNELEAFNPRDQLAFAFVRDH 388

Query: 256 LNRQAR 239
           +N + +
Sbjct: 389 INPKVK 394


>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
           protein contains proline-rich protein domains,
           INTERPRO:IPR000694
          Length = 189

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 225 LXHLPQXPITATTLPWPFPADLXSHS 148
           L  LP   + +T  PWP P+DL +H+
Sbjct: 13  LVSLPNPTVGSTKKPWPKPSDLANHN 38


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 290 GKNRILPPQGPFESAGQVYLRNXHIYH 210
           GK  I PP  P  +AGQ YL    ++H
Sbjct: 479 GKEYIYPPSDPSSAAGQTYLPPSLLHH 505


>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
           [Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
           Pfam domains, PF00439: Bromodomain and PF00240:
           Ubiquitin family
          Length = 1919

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/48 (20%), Positives = 26/48 (54%)
 Frame = -1

Query: 323 NVWXYLKLRRPGKNRILPPQGPFESAGQVYLRNXHIYHXHR*RQQPYL 180
           ++W + + + PG+N+ L P G F+    +  ++ H++      ++P +
Sbjct: 736 HLWPWAQ-KLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLM 782


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,472,882
Number of Sequences: 28952
Number of extensions: 194291
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)