Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060527.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               169   2e-42
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 31   0.87 
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   2.0  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     28   8.1  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  169 bits (410), Expect = 2e-42
 Identities = 90/146 (61%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
 Frame = +3

Query: 255 LEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRII 434
           LEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRII
Sbjct: 99  LEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRII 158

Query: 435 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTCLCSRRFS*LV*KSSICSLLMP--KEERLG 608
           NVIGEPIDERGP+ TDK AAIHAEA         +    L     +  LL P  K  ++G
Sbjct: 159 NVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEI--LETGIKVVDLLAPYAKGGKIG 216

Query: 609 CLAELVWAKLY*LWELINNVAKAHGG 686
                   K   + ELINNVAKAHGG
Sbjct: 217 LFGGAGVGKTVLIMELINNVAKAHGG 242



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 214 DVQFEDNLPPILNALRCKIDLP 279
           DVQF+++LPPILNAL  +   P
Sbjct: 85  DVQFDEDLPPILNALEVENRTP 106


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 330 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 470
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGP 59


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 542 ILVTGIKVVDLLAPYAK 592
           +L TGIKV+DL+ PYAK
Sbjct: 2   VLFTGIKVIDLIEPYAK 18


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = -3

Query: 511 WASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMA 332
           W+ +  A +L    GP SS+  P T    P    PTG+ +  P S    P   P  P M 
Sbjct: 670 WSGSSSAQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMG 726

Query: 331 MVRTVFSP 308
                 SP
Sbjct: 727 THPQQVSP 734


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 448 SPITLMMRPRV-SAPTGIRIGEPESSTG 368
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 352 PSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRHLESEAGYLRI 221
           P+V +  + R V+    W    TR    FC  +H ES  G+LR+
Sbjct: 96  PAVYAGHIDRVVWIKPSWCDQMTRERMTFCVGKHRES--GFLRV 137


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 384 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 479
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 658 ISSHNQYSFAHTSSAKQPNLSSFGIRSEQIDDF 560
           I++  +Y F    SAK+P++ SF     ++DDF
Sbjct: 719 INNAIEYFFIDFESAKEPDIVSFSPLQRRLDDF 751


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 363 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 470
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,234,177
Number of Sequences: 59808
Number of extensions: 484134
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)