Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060527.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   160   1e-39
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    46   3e-05
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    46   3e-05
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    37   0.016
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    32   0.33 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.44 
AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z70718-7|CAA94671.1|  289|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   4.1  
AF002702-1|AAC27976.1|  289|Caenorhabditis elegans PAX protein p...    29   4.1  
U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  160 bits (388), Expect = 1e-39
 Identities = 87/146 (59%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
 Frame = +3

Query: 255 LEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRII 434
           LEV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+
Sbjct: 95  LEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIM 154

Query: 435 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTCLCSRRFS*LV*KSSICSLLMP--KEERLG 608
           NVIGEPIDERGPI +   AAIHAEA         +    LV    +  LL P  K  ++G
Sbjct: 155 NVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEI--LVTGIKVVDLLAPYAKGGKIG 212

Query: 609 CLAELVWAKLY*LWELINNVAKAHGG 686
                   K   + ELINNVAKAHGG
Sbjct: 213 LFGGAGVGKTVLIMELINNVAKAHGG 238



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 214 DVQFEDNLPPILNAL 258
           DVQF++NLPPILN L
Sbjct: 81  DVQFDENLPPILNGL 95


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +3

Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 474 PTDKTAAIHAEAQSL 518
              + + +  +A  +
Sbjct: 123 ANARRSRVEVKAPGI 137


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +3

Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 474 PTDKTAAIHAEAQSL 518
              + + +  +A  +
Sbjct: 150 ANARRSRVEVKAPGI 164


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 306 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
           + +N       +GT G+     + + +G  +R PV  + LGRI N  G+PID+  P+
Sbjct: 71  ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 381 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 482
           +G   R PV  + LGRI N  G+PID+  P+ P D
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 345 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 461
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical
           protein Y38E10A.8 protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 514 VCRHVCAAGDSRNWYKSRRSARSLCQRRKDWVVWRNWCGQ 633
           +C  +C     ++W K  R+ARS     + W++ ++W  Q
Sbjct: 96  ICMELCEQNTLKDWIKGNRTARS-----RPWMLMKDWIKQ 130


>Z70718-7|CAA94671.1|  289|Caenorhabditis elegans Hypothetical
           protein C04G2.7 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/108 (20%), Positives = 47/108 (43%)
 Frame = -3

Query: 607 PNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWASA*IAAVLSVGMGPRSSIGSPITLMM 428
           P + ++ IR + I+D     EN+     ++++  +    A L+      SS   P +   
Sbjct: 120 PTMFAWEIRQKLIEDQICGEENVPSVSSINRIVRNKSFMAQLAAPTSVTSSAARPSSATS 179

Query: 427 RPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 284
             + S P G++    +S++     +  + S A V ++ +P  +A   T
Sbjct: 180 HHQRSPPRGVQQHMQQSTSVQQLQQLQLTSAATVNSLMTPPAFAMPGT 227


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 339 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 461
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191


>AF002702-1|AAC27976.1|  289|Caenorhabditis elegans PAX protein
           protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/108 (20%), Positives = 47/108 (43%)
 Frame = -3

Query: 607 PNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWASA*IAAVLSVGMGPRSSIGSPITLMM 428
           P + ++ IR + I+D     EN+     ++++  +    A L+      SS   P +   
Sbjct: 120 PTMFAWEIRQKLIEDQICGEENVPSVSSINRIVRNKSFMAQLAAPTSVTSSAARPSSATS 179

Query: 427 RPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 284
             + S P G++    +S++     +  + S A V ++ +P  +A   T
Sbjct: 180 HHQRSPPRGVQQHMQQSTSVQQLQQLQLTSAATVNSLMTPPAFAMPGT 227


>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
 Frame = -3

Query: 670 ATLLISSHNQYSFAHTSSAKQPNLSS--FGIRSEQIDDFYTSYENLL------LHRHVDK 515
           A LLI      +F   ++    +L S  FG++  Q+ +++ +Y+  L      LH+H+DK
Sbjct: 405 AVLLIQMDPYPAFISFANLLDRSLQSAFFGLKQPQMTEYFIAYDRYLEQELPALHQHLDK 464

Query: 514 L 512
           L
Sbjct: 465 L 465


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 629 PHQFRQTTQSFLLWHKERADRR-LLYQLRESPAAQTCRQTLGFSMNSSSLVGGDGTTLVN 453
           P    Q ++SF  +  +R  RR  L    E  A  T   T G+S +  ++ G DGT+ + 
Sbjct: 225 PDMIPQDSKSFSNFQMQRLLRRGRLNAEIEQLAKSTTTSTGGYSSDKINVTGPDGTSHIL 284

Query: 452 RFA 444
           ++A
Sbjct: 285 KYA 287


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 454 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 311
           +G P   + RP    P+        S+TG  RT+P+VP+++  R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,089
Number of Sequences: 27780
Number of extensions: 357629
Number of successful extensions: 954
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)