Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060527.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   8.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 34  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 132
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  FLKMLGAISRVGSGILAVKSVAEKSLSEC 111
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 559 KSRRSARSLCQRRKDWVVWRNWCGQNCIDYGN*STMLPKPM 681
           +S+RS+ S   R  +      +CG+    +G+ +  LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 559 KSRRSARSLCQRRKDWVVWRNWCGQNCIDYGN*STMLPKPM 681
           +S+RS+ S   R  +      +CG+    +G+ +  LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 683 TMGFGNIVDQFP*SIQFCPHQFRQTTQSFL 594
           T+  G  +++FP  +Q CP  F   T + L
Sbjct: 139 TLNCGLRLEKFPFDVQECPLIFESWTHNVL 168


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 34  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 132
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 270 RSPRLVLEVAQHLGENTVRTIAMDGTE 350
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 499 MLKPRVCRHVC 531
           ++KP +CR +C
Sbjct: 36  VIKPHICRKIC 46


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 339 DGTEGLVRGQPVLDSGSPI 395
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,571
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)