Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060527.seq
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 140 1e-33
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 140 1e-33
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 140 1e-33
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 42 5e-04
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 35 0.044
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 35 0.044
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.058
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.058
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.058
At4g34340.1 68417.m04880 expressed protein 29 2.9
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp... 29 3.8
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 28 5.0
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 6.7
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 8.8
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 8.8
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 140 bits (338), Expect = 1e-33
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Frame = +3
Query: 255 LEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRII 434
LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+
Sbjct: 111 LEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIM 170
Query: 435 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTCLCSRRFS*LV*KSSICSLLMPKEE--RLG 608
NV+GEPIDERG I T+ IH +A +L + L + LL P + ++G
Sbjct: 171 NVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEI--LATGIKVVDLLAPYQRGGKIG 228
Query: 609 CLAELVWAKLY*LWELINNVAKAHGG 686
K + ELINNVAKAHGG
Sbjct: 229 LFGGAGVGKTVLIMELINNVAKAHGG 254
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 140 bits (338), Expect = 1e-33
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Frame = +3
Query: 255 LEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRII 434
LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+
Sbjct: 114 LEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIM 173
Query: 435 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTCLCSRRFS*LV*KSSICSLLMPKEE--RLG 608
NV+GEPIDERG I T+ IH +A +L + L + LL P + ++G
Sbjct: 174 NVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEI--LATGIKVVDLLAPYQRGGKIG 231
Query: 609 CLAELVWAKLY*LWELINNVAKAHGG 686
K + ELINNVAKAHGG
Sbjct: 232 LFGGAGVGKTVLIMELINNVAKAHGG 257
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 140 bits (338), Expect = 1e-33
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Frame = +3
Query: 255 LEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRII 434
LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+
Sbjct: 111 LEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIM 170
Query: 435 NVIGEPIDERGPIPTDKTAAIHAEAQSLSTCLCSRRFS*LV*KSSICSLLMPKEE--RLG 608
NV+GEPIDERG I T+ IH +A +L + L + LL P + ++G
Sbjct: 171 NVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEI--LATGIKVVDLLAPYQRGGKIG 228
Query: 609 CLAELVWAKLY*LWELINNVAKAHGG 686
K + ELINNVAKAHGG
Sbjct: 229 LFGGAGVGKTVLIMELINNVAKAHGG 254
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 474 PTDKTAAIHAEAQSL 518
+ + +A +
Sbjct: 394 SDHEQRRVEVKAPGI 408
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 473 DGTTLVNRFADYIDDATEGFSSHRDTNW 390
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
1,4-alpha-D-glucan maltohydrolase, putative almost
identical to beta-amylase BMY3 GI:15149457 from
[Arabidopsis thaliana]; identical to cDNA putative
beta-amylase BMY3 (BMY3) GI:15149456
Length = 536
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 613 KQPNLSSF----GIRSEQIDDFYTSYENLLLHRHVDKLWASA*IAAVLSVGMGPRSSIGS 446
+QPN SSF G Q DF+ S+ + LL H D+ VLSV S IG
Sbjct: 309 QQPNSSSFFSDGGSWESQYGDFFLSWYSSLLTSHADR---------VLSVASSAFSGIGV 359
Query: 445 PI 440
P+
Sbjct: 360 PL 361
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -3
Query: 649 HNQYSFAHTSSAKQPNLSSFG-IRSEQIDDFYTSYENLLLHRHVDKLWASA*IAAVLSVG 473
H++++ ++ S FG I D+ + + ++++ +V S+ A+ +S
Sbjct: 22 HSRHNLSYDLSEGPKPRPKFGNISKTDHDEIFPPDDPIIINSNVTHQRFSSVSASTMS-- 79
Query: 472 MGPRSSIGSPITLMMRPRVSAPTGIRIGE 386
GP S GSP + RVS P G E
Sbjct: 80 SGPASGEGSPCVMSPWARVSPPWGADFNE 108
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 619 SAKQPNLSSFGIRSEQI-DDFYTSYENLLLHRHVDKLWASA 500
S K+ + GI E D+ +SY L L RH DKL +A
Sbjct: 7 SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAA 47
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 426 DRGFQLP-PGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQ 289
D+ Q P P V+ + R + GLS+QYR + LC+ PN+ + Q
Sbjct: 295 DQTSQYPSPASSAVTATSARSSLGLSIQYR---GASLCTPPNIFVDQ 338
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
(TATA-binding protein) -interacting protein 120 (TIP120);
contains TIGRFAM profile TIGR01612: reticulocyte binding
protein
Length = 1866
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +1
Query: 484 RLLLFMLKPRVCRHVCAAGDSRNWYKSRRSARSLCQ 591
R+ L + + H+C + S +W ++S +++C+
Sbjct: 1529 RVTLQLFLQEIVNHICESITSSSWASKKKSGKAICK 1564
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,733,277
Number of Sequences: 28952
Number of extensions: 340625
Number of successful extensions: 908
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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