Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060526.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.48 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   2.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   3.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   5.9  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   7.8  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = -2

Query: 220 LFIPSSEVPVGGRSRPWYXNASRDAARLKRSAYVAWDNARRRRDPNISGERRK 62
           +F  + ++P+   S+  Y N S D A L +S+++ ++++ +R   + + ++ K
Sbjct: 237 IFQQAPQIPLSNASQQSYINHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHK 289


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 339 LLTYTAKLFDTRSSFDDQDEXVVRQHE*GSDQTIQEEGDHHTV 467
           +L  T K+F+T  SFD   E V + H   SD  I +  D +T+
Sbjct: 114 MLNITLKVFNTMLSFDKAAEYVTQLH---SDSIINQMFDLYTL 153


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 SGSAEEKQNRPHG*DA*NSRSPSQSADIYRQTLRYP 373
           S    EK+NRP    A  SRS S+++ +YRQT   P
Sbjct: 351 SAPVREKRNRPAH-SAQISRSISKTSRMYRQTAEEP 385


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 475 RICGQQKVQQRSSCPSISGTTGGLCXQLGEAXXXSEIVGSPNPE--VSGSXPQP 630
           RI  +  V+QR  CP++ G+ G     L  A   +EIV   NP    S + PQP
Sbjct: 381 RIQQEGPVEQRPLCPTLIGSAGA-ARMLFSA---AEIVNRNNPSSGESTTLPQP 430


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  DLEAALYFRLSPEMLGS 92
           D+ A  +F LSPEMLGS
Sbjct: 120 DVSAWAHFSLSPEMLGS 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,630
Number of Sequences: 5004
Number of extensions: 59986
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)