Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060526.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0519 - 21692581-21692793,21692822-21692962 30 1.5
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 2.0
06_01_0216 - 1641914-1642381,1642471-1642725 29 3.5
07_01_0322 - 2258067-2258519,2258620-2258781,2258896-2259159,225... 29 4.6
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 29 4.6
11_04_0191 - 14692104-14692484 28 6.0
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 28 6.0
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 28 8.0
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 28 8.0
>06_03_0519 - 21692581-21692793,21692822-21692962
Length = 117
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 470 RAGSVVSRRSNKEARAPRYLGQRVGCVXSWEK 565
RA V RR + AR PRY G R+G + EK
Sbjct: 10 RAEVDVKRREQRGARVPRYSGSRIGEATAVEK 41
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 50 SGVIFPPFP*DVRIPTSPGIIPCHVCGPLEACSIPAG 160
SG FPP P PTSPG P + P+G
Sbjct: 75 SGDFFPPAPPTTTTPTSPGTTPSPTTVAADVSKTPSG 111
>06_01_0216 - 1641914-1642381,1642471-1642725
Length = 240
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 148 AARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKVIAKAKSARA 2
AAR K + V A+R+R P S K A+S KK + A+ ARA
Sbjct: 162 AARSKAAKGVV-GGAKRKRTPRPSAAAAKKPASSAEAKKAVPPARPARA 209
>07_01_0322 -
2258067-2258519,2258620-2258781,2258896-2259159,
2259196-2259294,2259723-2260131,2260223-2260350,
2261115-2261181,2262766-2262838,2262911-2263130
Length = 624
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 443 RGGRPPHCIRAGSVVSRRSNKEARAPRYLGQRVGC 547
R GR + GS + +N +ARA R + Q +GC
Sbjct: 436 RSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGC 470
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 411 QHE*GSDQTIQEEGDHHTVSGPDLWSAEGP 500
QH + QT +E DHHT S PD+ P
Sbjct: 299 QHGPVASQTSEEAQDHHTHSTPDISPTNSP 328
>11_04_0191 - 14692104-14692484
Length = 126
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 424 AVIRRSKRRATTTLYPGRICGQQKVQQRSSCPS 522
A RR +RR++ T + G CG+Q+ +QR S P+
Sbjct: 3 APARRRRRRSSVTAHGG--CGKQRWRQRRSRPT 33
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 291 TAPMGRMRKIHAVHPNLLTYTAKLFDTRSSFD-----DQDEXVVRQHE*GSDQTIQEEGD 455
T+ + +R HA P+L T+T SFD D+D+ V H+ T+ E+ +
Sbjct: 155 TSQITEVRDTHAT-PDLPTFTIPKRFELDSFDLGIPEDRDDDDVDHHQLPHQGTMLEDEN 213
Query: 456 HHT 464
HHT
Sbjct: 214 HHT 216
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 100 RRRDPNISGERRKYNAASRSYKKVIAK 20
RRR SGE KYN++ ++K+++AK
Sbjct: 310 RRRMMMTSGEAVKYNSSLDAFKQIVAK 336
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 502 QRSSCPSISGTTGGLCXQLGEAXXXSEIVGSPNPEVSGSXPQP 630
QR+S S G++ G Q+ A S I S +PE S S P P
Sbjct: 315 QRTSTASSIGSSEGTSEQIKVASTISLIDFSADPEPSASVPPP 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,431
Number of Sequences: 37544
Number of extensions: 517423
Number of successful extensions: 1467
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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