Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060526.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11) 48 9e-06
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42) 46 3e-05
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46) 45 5e-05
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32) 45 5e-05
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 43 2e-04
SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16) 36 0.031
SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08) 36 0.041
SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05) 35 0.054
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16) 35 0.054
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031) 35 0.071
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029) 35 0.071
SB_30110| Best HMM Match : TFIIF_beta (HMM E-Value=2.5) 34 0.12
SB_20973| Best HMM Match : TFIIF_beta (HMM E-Value=3.3) 34 0.12
SB_18035| Best HMM Match : Triadin (HMM E-Value=4.2) 34 0.12
SB_8436| Best HMM Match : Cor1 (HMM E-Value=3.2) 34 0.12
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11) 33 0.16
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_27446| Best HMM Match : Peptidase_C21 (HMM E-Value=2.7) 33 0.22
SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 32 0.50
SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29) 31 0.87
SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_53389| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10) 31 0.87
SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) 31 0.87
SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.87
SB_29903| Best HMM Match : SAP (HMM E-Value=2.2e-11) 31 0.87
SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.87
SB_10251| Best HMM Match : RVT_1 (HMM E-Value=0.0022) 31 0.87
SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44) 31 0.87
SB_9264| Best HMM Match : DnaD (HMM E-Value=1.3) 31 0.87
SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25449| Best HMM Match : Exo_endo_phos (HMM E-Value=7.4e-07) 30 1.5
SB_9694| Best HMM Match : IclR (HMM E-Value=5) 30 1.5
SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05) 30 1.5
SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 2.7
SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) 29 2.7
SB_15147| Best HMM Match : C1_2 (HMM E-Value=3) 29 3.5
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 4.7
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08) 28 6.2
SB_10373| Best HMM Match : PKD (HMM E-Value=5) 28 8.1
SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0) 28 8.1
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15) 28 8.1
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96) 28 8.1
>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
Length = 877
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 331
++LDL+LT+ P++ G + S+DH LI + L+ + T R V+ Y ADW
Sbjct: 720 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNYKRADWT 777
Query: 330 GLREFYASYPWGRFCFSSAD 271
GL E + PW CFS +D
Sbjct: 778 GLNESLKNIPWD-LCFSQSD 796
>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 46.8 bits (106), Expect = 2e-05
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -3
Query: 567 GFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVPLS--R 394
G +QL + TR + A+LLD+ T P RI C G +G S H L+ A LS R
Sbjct: 89 GLTQLIKEATRITENK---ATLLDVFYTNHPDRIACSGVSHVGISYHSLVYAYRKLSIVR 145
Query: 393 PDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDV 262
+ TT YR+ + S D R AS W F S DP+V
Sbjct: 146 LTKNTTIIYRKFKNFNS---DAFRADIASLNW-NFLISYNDPNV 185
>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 331
++LD +LT+ P++ Q G + S+DH LI + L+ + T R V+ + ADW
Sbjct: 172 NILDFILTSIPSKFQHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 229
Query: 330 GLREFYASYPWGRFCFSSAD 271
GL E + PW CFS +D
Sbjct: 230 GLNESLKNIPWD-LCFSQSD 248
>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 331
++LDL+LT+ P++ G + S+DH LI + L+ + T R V+ + ADW
Sbjct: 34 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 91
Query: 330 GLREFYASYPWGRFCFSSAD 271
GL E + PW CFS +D
Sbjct: 92 GLNESLKNIPWD-LCFSQSD 110
>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
Length = 715
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 331
++LDL+LT+ P++ G + S+DH LI + L+ + T R V+ + ADW
Sbjct: 179 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 236
Query: 330 GLREFYASYPWGRFCFSSAD 271
GL E + PW CFS +D
Sbjct: 237 GLNESLKNIPWD-LCFSQSD 255
>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
Length = 1232
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -3
Query: 498 DLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGLR 322
DL+LT+ P++ Q G + S+DH LI + L+ + T R V+ + ADW GL
Sbjct: 495 DLILTSIPSKFQHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWTGLN 552
Query: 321 EFYASYPWGRFCFSSAD 271
E + PW CFS +D
Sbjct: 553 ESLKNIPWD-LCFSQSD 568
>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
Length = 871
Score = 45.2 bits (102), Expect = 5e-05
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = -3
Query: 567 GFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVPLS--R 394
G +QL + TR A+LLD++ T P RI C G +G SDH L+ A LS
Sbjct: 231 GSTQLIKEATRITENT---ATLLDVIYTNHPDRIACSGVSHVGISDHSLVYAYRKLSIGP 287
Query: 393 PDR-RTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDV 262
P++ +T YR++ + ++D R AS W F S DP+V
Sbjct: 288 PNKGHSTIIYRKLKNF---NYDAFRADIASLNW-NFLNSYNDPNV 328
>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 43.6 bits (98), Expect = 2e-04
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = -3
Query: 615 TTD-FXVRTAYDFAXXXGFSQLXTQPTRCPRYRGARASL--LDLLLTTDPARIQCGGRPP 445
TTD F FSQ T PTR RASL LDL+L++ PA + P
Sbjct: 311 TTDQFDESVLLTLVNDFAFSQHVTVPTR-------RASLKTLDLVLSSTPAMVSDVDTSP 363
Query: 444 LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYAS 307
G SDH ++ ++ L RR+ RV+ + A+WDG R+ S
Sbjct: 364 -GMSDHDIVTFSITLC--PRRSVRPPHRVYLFDKANWDGFRQHVTS 406
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = -3
Query: 564 FSQLXTQPTRCPRYRGARASL--LDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVPLSRP 391
FSQ T PTR RASL LDL+L++ PA + P G SDH ++ ++ L
Sbjct: 129 FSQHVTVPTR-------RASLKTLDLVLSSTPAMVSDVDTSP-GMSDHDIVTFSITLC-- 178
Query: 390 DRRTTTGYRRVWRYMSADWDGLREFYAS 307
RR+ RV+ + A+WDG R+ S
Sbjct: 179 PRRSVRPPHRVYLFDKANWDGFRQHVTS 206
>SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = -3
Query: 567 GFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVPLS--R 394
G +QL + TR A+LL+++ T P RI C G +G SDH L+ A LS
Sbjct: 158 GLTQLIKEATRITENT---ATLLEVIYTNHPDRIACSGVSHVGISDHSLVYAYRKLSIGP 214
Query: 393 PDR-RTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDV 262
P++ +T YR+ + S D R AS W F S DP+V
Sbjct: 215 PNKGHSTIIYRKFKNFNS---DAFRADIASLNW-NFLNSYNDPNV 255
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = -3
Query: 564 FSQLXTQPTRCPRYRGARASL--LDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVPLSRP 391
FSQ T PTR RASL LDL+L++ PA + P G SDH ++ ++ L
Sbjct: 381 FSQHVTVPTR-------RASLKTLDLVLSSTPAMVSDVDTSP-GMSDHDIVTFSITLC-- 430
Query: 390 DRRTTTGYRRVWRYMSADWDGLREFYAS 307
RR+ RV+ + A+WDG R+ S
Sbjct: 431 PRRSVRPPHRVYLFDKANWDGFRQHVTS 458
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 36.3 bits (80), Expect = 0.023
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
+FA F+QL +PTR +L+DL+ RI G P+ SDH C+I
Sbjct: 78 NFARTFHFTQLVKEPTRIT---DTSRTLIDLIFVNKEHRIAISGVVPVPLSDHYLVFCVI 134
Query: 417 RAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTW 238
+A V R YR Y + D D + + PW +S D D+ A+L TW
Sbjct: 135 KAGVFTKAKPRMLE--YR---SYKNLDADSFNDDLRNVPW--HIVNSMD-DIDDALL-TW 185
>SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16)
Length = 525
Score = 35.9 bits (79), Expect = 0.031
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
+FA F+QL +PTR +L+DL+ RI G P+ SDH C+I
Sbjct: 204 NFARTFHFTQLVKEPTRIT---DTSRTLIDLIFVNKEHRIAISGVVPVPLSDHYLVFCVI 260
Query: 417 RAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTW 238
+A V R YR Y + D D + + PW +S D D+ A+L TW
Sbjct: 261 KAGVFTKAKPRMLE--YR---SYKNFDADSFNDDLRNVPW--HIVNSMD-DIDDALL-TW 311
>SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)
Length = 696
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR Y SL+D +T+ P +I+ G LG SDH LI
Sbjct: 593 SQLLNEPTRITMYS---KSLIDHFVTSCPEKIKSSGVIHLGLSDHSLI 637
>SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
Length = 670
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR + SL+D +T+ P +I G LGSSDH LI
Sbjct: 506 SQLLNEPTRITMHS---KSLIDHFVTSCPDKINSSGVIHLGSSDHSLI 550
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 35.1 bits (77), Expect = 0.054
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
+FA F+QL +PTR +L+DL+ RI G P+ SDH C+I
Sbjct: 1804 NFARTFHFTQLVKEPTRIT---DTSRTLIDLIFVNKEHRIANSGVVPVPLSDHYLVFCVI 1860
Query: 417 RAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTW 238
+A V R YR Y + D D + + PW +S D D+ A+L TW
Sbjct: 1861 KAGVFTKAKPRMLE--YR---SYKNFDADSFNDDLRNVPW--HIVNSMD-DIDDALL-TW 1911
>SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16)
Length = 399
Score = 35.1 bits (77), Expect = 0.054
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
+FA F+QL +PTR +L+DL+ RI G P+ SDH C+I
Sbjct: 204 NFARTFHFTQLVKEPTRIT---DTSRTLIDLIFVNKEHRIANSGVVPVPLSDHYLVFCVI 260
Query: 417 RAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTW 238
+A V R YR Y + D D + + PW +S D D+ A+L TW
Sbjct: 261 KAGVFTKAKPRMLE--YR---SYKNFDADSFNDDLRNVPW--HIVNSMD-DIDDALL-TW 311
>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
Length = 546
Score = 34.7 bits (76), Expect = 0.071
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 83 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 141
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRF 289
+ ++ +R Y + D D ++ PW F
Sbjct: 142 VLKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPWHPF 180
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 34.7 bits (76), Expect = 0.071
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 375 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 433
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ + PW
Sbjct: 434 VLKERINQNKPKVISFR---SYKNFDADSYKKLLETAPW 469
>SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029)
Length = 318
Score = 34.7 bits (76), Expect = 0.071
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
+FA F+QL +PTR +L+DL+ RI G P+ SDH C+I
Sbjct: 144 NFARTFHFTQLVKEPTRIT---DTSRTLIDLIFVNKEHRIANSGVVPVPLSDHYLVFCVI 200
Query: 417 RAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTW 238
+A V R YR Y + D D + + PW +S D D+ A+L TW
Sbjct: 201 KAGVFTKAKPRMLE--YR---PYKNFDADSFNDDLRNVPW--HIVNSMD-DIDDALL-TW 251
>SB_30110| Best HMM Match : TFIIF_beta (HMM E-Value=2.5)
Length = 368
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 62 DLEAEQDFKCLMTQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 120
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ PW
Sbjct: 121 VLKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPW 156
>SB_20973| Best HMM Match : TFIIF_beta (HMM E-Value=3.3)
Length = 239
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 14 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 72
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ PW
Sbjct: 73 VLKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPW 108
>SB_18035| Best HMM Match : Triadin (HMM E-Value=4.2)
Length = 331
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 14 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 72
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ PW
Sbjct: 73 VLKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPW 108
>SB_8436| Best HMM Match : Cor1 (HMM E-Value=3.2)
Length = 334
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 55 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 113
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ PW
Sbjct: 114 VLKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPW 149
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 33.5 bits (73), Expect = 0.16
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -3
Query: 564 FSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAAV-PLSR 394
F L TQPTR + RG +L+D+LL+ P +C G SDH LI +
Sbjct: 1664 FKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYGVLKERIN 1722
Query: 393 PDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
++ +R Y + D D ++ PW
Sbjct: 1723 QNKPKVISFR---SYKNFDADSYKKMLEMAPW 1751
>SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11)
Length = 887
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRG--ARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRA 412
D F L TQPTR + RG +L+D+LL+ P +C G SDH LI
Sbjct: 396 DLEAEQDFKCLITQPTRVEK-RGDVITKTLIDVLLSNKPELFKCAGNYYPCLSDHALIYG 454
Query: 411 AV-PLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 298
+ ++ +R Y + D D ++ PW
Sbjct: 455 ILKERINQNKPKVISFR---SYKNFDADSYKKMLEMAPW 490
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR + SL+D +T+ P +I G LG SDH LI
Sbjct: 362 SQLLNEPTRITMHS---KSLIDHFVTSCPKKINSSGVIHLGLSDHSLI 406
>SB_27446| Best HMM Match : Peptidase_C21 (HMM E-Value=2.7)
Length = 246
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR + SL+D +T+ P +I G LG SDH LI
Sbjct: 58 SQLLNEPTRITMHS---KSLIDHFVTSCPEKINSSGVIHLGLSDHSLI 102
>SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
Length = 283
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D ++T+ P +I G +G SDH LI
Sbjct: 136 SQLINEPTRITI---DSKSLIDHIVTSSPDKINSSGVIHIGPSDHSLI 180
>SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29)
Length = 243
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 96 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 140
>SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 99 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 143
>SB_53389| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
Length = 774
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 444 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 488
>SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13)
Length = 851
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 515 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 559
>SB_5021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL T+PTR + + SLLD +T P +I G G SDH +I
Sbjct: 325 SQLITKPTRITK---SSKSLLDHYVTNSPEKIVKTGVIQTGLSDHGMI 369
>SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 940
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 164 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 208
>SB_29903| Best HMM Match : SAP (HMM E-Value=2.2e-11)
Length = 510
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 363 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 407
>SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1821
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 649 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 693
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 1110 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 1154
>SB_10251| Best HMM Match : RVT_1 (HMM E-Value=0.0022)
Length = 717
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 251 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 295
>SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)
Length = 759
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 214 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 258
>SB_9264| Best HMM Match : DnaD (HMM E-Value=1.3)
Length = 240
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 49 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 93
>SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G SDH LI
Sbjct: 361 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDHSLI 405
>SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 366 RRVWRYMSADWDGLREFYASYPWGRFCFSSAD 271
R V+ + ADW GL E + PW C S +D
Sbjct: 40 RVVYNFKRADWTGLNESLKNIPWD-LCLSQSD 70
>SB_25449| Best HMM Match : Exo_endo_phos (HMM E-Value=7.4e-07)
Length = 366
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAA--VPLSRPDRRTTTGYRRVWRYMSADW 334
SLLD++L + P R G LG SDH L+ A L +P R YR + + D
Sbjct: 231 SLLDVVLVSHPDRCAKSGNLHLGISDHDLVYAVRKQKLPKPTARIVE-YRSM---KALDK 286
Query: 333 DGLREFYASYPW-GRFCFSSAD 271
D PW + F D
Sbjct: 287 DAFVSDLRDIPWDSAYAFDDVD 308
>SB_9694| Best HMM Match : IclR (HMM E-Value=5)
Length = 282
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -3
Query: 507 SLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAA--VPLSRPDRRTTTGYRRVWRYMSADW 334
SLLD++L + P R G LG SDH L+ A L +P R YR + + D
Sbjct: 41 SLLDVVLVSHPDRCAKSGNLHLGISDHDLVYAVRKQKLPKPTARIVE-YRSM---KALDK 96
Query: 333 DGLREFYASYPW-GRFCFSSAD 271
D PW + F D
Sbjct: 97 DAFVSDLRDIPWDSAYAFDDVD 118
>SB_30943| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
Length = 354
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH----CLI 418
D GF L T+PTR + A+L+D + T P +I G G +DH C +
Sbjct: 155 DMLFDSGFMPLITKPTRITDHS---ATLIDHIYTNVPQKIAKAGICLAGITDHLPVFCTV 211
Query: 417 RAAVPLSRPDR 385
+PL + ++
Sbjct: 212 TNILPLRKDNK 222
>SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 816
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -3
Query: 528 RYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAA--VPLSRPDRRTTTGYRRVW 355
R + SLLD++L + P R G LG S+H L+ A L +P R YR +
Sbjct: 171 RVASSTKSLLDVVLVSHPDRFAKSGNLHLGISNHDLVYAVRKQKLPKPTARIVE-YRSM- 228
Query: 354 RYMSADWDGLREFYASYPW-GRFCFSSAD 271
+ D D PW + F D
Sbjct: 229 --KALDKDAFVSDLRDIPWDSAYAFDDVD 255
>SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 342 ADWDGLREFYASYPWGRFCFSSAD 271
ADW GL E + PW CFS +D
Sbjct: 282 ADWTGLNESLKNIPWD-LCFSQSD 304
>SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)
Length = 509
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDHCLI 418
SQL +PTR SL+D +T+ P +I G +G S+H LI
Sbjct: 456 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSEHSLI 500
>SB_15147| Best HMM Match : C1_2 (HMM E-Value=3)
Length = 163
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 430 IRRSKRRATTTLYPGRICGQQKVQQRSSCPSISGT 534
IRRSKRR + + R+C +Q+ SS S S T
Sbjct: 7 IRRSKRRFSGNQFVRRLCARQEEASASSTSSQSAT 41
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 501 LDLLLTTDPARIQ-CGGRPPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGL 325
LDL+ +++P IQ C L + ++ + + T ++++Y AD+DGL
Sbjct: 329 LDLVFSSNPGLIQACHVTNDLSDHEGAVL---FEVDTSPKYTPKAPHKIYQYHKADYDGL 385
Query: 324 REFYASY 304
R + +++
Sbjct: 386 RSYLSTF 392
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 243 TWCSRGWNCLFPLLKCPLGVAADPGXTMPAG 151
T C GW C L P G DPG PAG
Sbjct: 2757 TLCEAGWYCNISGLAAPQG-QCDPGYYCPAG 2786
>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 430 IRRSKRRATTTLYPGRICGQQKVQQRSSCPSISGTTGGLCXQLGEA--XXXSEIVGSPNP 603
+RR +RRA + G G Q+ +Q+ SISG G + A +VGSP+
Sbjct: 383 VRRYRRRARLAVDCGHCSGSQESRQKKQRKSISGHLDGHFWEGPSAAEDRKQSMVGSPSY 442
Query: 604 EVSGSXPQPLFVVNVL 651
+ P +++L
Sbjct: 443 HMDPQWAIPREKISIL 458
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 585 DFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRP-----PLGSSDHCL 421
D GF Q+ PT YR + LDL++ D ++ GRP P SDH
Sbjct: 53 DMLDAAGFEQMVVSPT----YR--KDHTLDLVVVWDDLSVR--GRPEIIAFPNSVSDHSA 104
Query: 420 IRAAVPLSRPDRRTTTGYRRVWRYMSAD 337
I V + +P YRR R ++ D
Sbjct: 105 IICDVDMPKPCASKKILYRRPLRKINLD 132
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 28.3 bits (60), Expect = 6.2
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = -3
Query: 543 PTRCPRYRGA----RASLLDLLLTTDPARIQCGGRPPLGSSDHCLIRAAVP--LSRPDRR 382
PT+ R+R A +LLD++LT P + G SDH L+ + +S+ +R+
Sbjct: 1403 PTKKMRFRKAVTPTSETLLDVILTNKPELFRASGVLNPEMSDHHLVYGIMKERVSQHERK 1462
Query: 381 TTTGYRRVWRYMSADWDGLREFYASYPW 298
T +R S D + E +S PW
Sbjct: 1463 VVT-FRST---KSLDVEKFNEDLSSAPW 1486
>SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08)
Length = 285
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 561 SQLXTQPTRCPRYRGARASLLDLLLTTDPARIQCGGRPPLGSSDH 427
SQL +PTR SL+D +T+ P +I G +G SDH
Sbjct: 243 SQLINEPTRITI---DSKSLIDHFVTSSPDKINSSGVIHIGPSDH 284
>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
Length = 230
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 472 GRICGQQKVQQRSSCPSISGTTGGLCXQLGEAXXXSEIVGSPNPEVSGSXPQP 630
G CG+ + S +ISG G C L A +V P P G P+P
Sbjct: 176 GLTCGRSHMNGLQSVYNISGGQFGTCTPLDLAKILKTVV-FPPPTFKGCPPRP 227
>SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 583
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 435 TIQEEGDHHTV-SGPDLWSAEGPTKKLVPLDI 527
T+QE G HH + S PDL +A G +L + +
Sbjct: 215 TLQERGPHHRINSEPDLTAAGGLGPRLASISV 246
>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 244 DVVLQGMELFIPSSEVPVGGRSRPWYXNASRDAARLKRSAYVA 116
++ + +E+F+P+ V V +PW + + ++SA+ A
Sbjct: 610 EIFCKAIEIFLPARRVRVCSSDKPWVSSRLKSLVSRRQSAFKA 652
>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
Length = 802
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 624 GXRTTDFXVRTAYDFAXXXGFSQLXTQPTRCPRYRGARASLLDLLLTTD 478
G +T + YDF S + + RCP +G R +D+++ +D
Sbjct: 542 GKTSTSRPPYSPYDFRLYITLSCIRKKDRRCPSIQGCRLVQMDVIIGSD 590
>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
Length = 725
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 387 RRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKT 241
R + GY Y A DG ASY CFSSA +C + T
Sbjct: 624 RFASPGYVLSANYACATDDGFHRLSASYIPYLCCFSSATDLICRVIFTT 672
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,090,162
Number of Sequences: 59808
Number of extensions: 538872
Number of successful extensions: 2150
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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