Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060526.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein. 35 0.31
BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein. 35 0.31
BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein. 35 0.31
AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associate... 35 0.31
AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense... 35 0.31
AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsens... 35 0.31
AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense... 35 0.31
AL137800-2|CAI19477.1| 757|Homo sapiens Smg-7 homolog, nonsense... 35 0.31
AK091477-1|BAC03672.1| 757|Homo sapiens protein ( Homo sapiens ... 35 0.31
AK056035-1|BAB71079.1| 799|Homo sapiens protein ( Homo sapiens ... 35 0.31
AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript varian... 35 0.31
AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein. 35 0.31
>D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein.
Length = 1122
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 640 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 699
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 700 HIPYSQQRPSGPGPMNQ 716
>BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein.
Length = 839
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 357 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 416
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 417 HIPYSQQRPSGPGPMNQ 433
>BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein.
Length = 1178
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 609 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 668
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 669 HIPYSQQRPSGPGPMNQ 685
>AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associated
antigen SGA-56M protein.
Length = 802
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 320 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 379
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 380 HIPYSQQRPSGPGPMNQ 396
>AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 655 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 714
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 715 HIPYSQQRPSGPGPMNQ 731
>AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 655 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 714
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 715 HIPYSQQRPSGPGPMNQ 731
>AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1099
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 567 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 626
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 627 HIPYSQQRPSGPGPMNQ 643
>AL137800-2|CAI19477.1| 757|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 757
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 567 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 626
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 627 HIPYSQQRPSGPGPMNQ 643
>AK091477-1|BAC03672.1| 757|Homo sapiens protein ( Homo sapiens
cDNA FLJ34158 fis, clone FCBBF3013589, weakly similar to
GLUTENIN, LOW MOLECULAR WEIGHT SUBUNIT PRECURSOR. ).
Length = 757
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 567 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 626
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 627 HIPYSQQRPSGPGPMNQ 643
>AK056035-1|BAB71079.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ31473 fis, clone NT2NE2001530. ).
Length = 799
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 609 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 668
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 669 HIPYSQQRPSGPGPMNQ 685
>AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript variant 2
protein.
Length = 1071
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 589 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 648
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 649 HIPYSQQRPSGPGPMNQ 665
>AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein.
Length = 1137
Score = 34.7 bits (76), Expect = 0.31
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 62 FPPFP*DVRIPTSPGIIPCHVCGPL-EACSIPAGIVIPGSAATPNGHFRRGNKQFHPLEH 238
FPP P P +IP V + + PAG+ +PG+ P H GN+ +
Sbjct: 655 FPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQS 714
Query: 239 HVFKTAXQTSGSAEEKQ 289
H+ + + SG Q
Sbjct: 715 HIPYSQQRPSGPGPMNQ 731
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,803,751
Number of Sequences: 237096
Number of extensions: 2825747
Number of successful extensions: 7179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7164
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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