Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060526.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      33   0.48 
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    33   0.48 
AE013599-129|AAF57296.3|  499|Drosophila melanogaster CG14471-PA...    30   2.6  
AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB...    30   2.6  
AY089561-1|AAL90299.1| 1003|Drosophila melanogaster LP05330p pro...    29   6.0  
AE014134-1769|AAN10721.1| 1003|Drosophila melanogaster CG4839-PB...    29   6.0  
AE014134-1768|AAF52864.1| 1003|Drosophila melanogaster CG4839-PA...    29   6.0  
AE014298-2907|AAF48997.1|  581|Drosophila melanogaster CG14223-P...    29   7.9  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 648 NVHHKEWLGXRTTDFXVRTAYDFAXXXGFSQLX-TQPTRCPRYRGARASLLDLLLTTDPA 472
           N  H+ W   R   +  +   + +    FS L  TQPT  P    A+AS LDL LT  P 
Sbjct: 163 NSRHRAWKCTRANGWG-KILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLCLTNIPN 221

Query: 471 RIQCGGRPPLGSSDH 427
           ++         SSDH
Sbjct: 222 QLANPAVMQELSSDH 236


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 648 NVHHKEWLGXRTTDFXVRTAYDFAXXXGFSQLX-TQPTRCPRYRGARASLLDLLLTTDPA 472
           N  H+ W   R   +  +   + +    FS L  TQPT  P    A+AS LDL LT  P 
Sbjct: 111 NSRHRAWKCTRANGWG-KILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLCLTNIPN 169

Query: 471 RIQCGGRPPLGSSDH 427
           ++         SSDH
Sbjct: 170 QLANPAVMQELSSDH 184


>AE013599-129|AAF57296.3|  499|Drosophila melanogaster CG14471-PA,
           isoform A protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 261 RRQDQQRKSRTAPMGRMRKIHAVHPNLLTYTAKLFDTRSSF 383
           RRQ +QR+  T  MG  R     H  L  ++ K+F  RS++
Sbjct: 240 RRQQRQRQHGTVSMGIARNRTQRHHKLPMHSVKIFHNRSTY 280


>AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB,
           isoform B protein.
          Length = 1209

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 261 RRQDQQRKSRTAPMGRMRKIHAVHPNLLTYTAKLFDTRSSF 383
           RRQ +QR+  T  MG  R     H  L  ++ K+F  RS++
Sbjct: 240 RRQQRQRQHGTVSMGIARNRTQRHHKLPMHSVKIFHNRSTY 280


>AY089561-1|AAL90299.1| 1003|Drosophila melanogaster LP05330p
           protein.
          Length = 1003

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 402 VVRQHE*GSDQTIQEEGDHHTVSGPDLWSAEGP 500
           ++R+HE GS+  +  EG +  + G  L ++ GP
Sbjct: 459 IIREHEEGSEIYVSAEGQYDVIRGGQLVASFGP 491


>AE014134-1769|AAN10721.1| 1003|Drosophila melanogaster CG4839-PB,
           isoform B protein.
          Length = 1003

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 402 VVRQHE*GSDQTIQEEGDHHTVSGPDLWSAEGP 500
           ++R+HE GS+  +  EG +  + G  L ++ GP
Sbjct: 459 IIREHEEGSEIYVSAEGQYDVIRGGQLVASFGP 491


>AE014134-1768|AAF52864.1| 1003|Drosophila melanogaster CG4839-PA,
           isoform A protein.
          Length = 1003

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 402 VVRQHE*GSDQTIQEEGDHHTVSGPDLWSAEGP 500
           ++R+HE GS+  +  EG +  + G  L ++ GP
Sbjct: 459 IIREHEEGSEIYVSAEGQYDVIRGGQLVASFGP 491


>AE014298-2907|AAF48997.1|  581|Drosophila melanogaster CG14223-PA
           protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 146 SIPAGIVIPGSAATPNGHFRRGNKQFHPLEHHVFKTAXQTSGSAEEKQNRPH 301
           S P   + P +  TPNGHF  GN   H   HH +      +   +++Q   H
Sbjct: 166 STPLKPLTPLTQLTPNGHF-LGNGSVH---HHTYTNQHILASHQQQQQQHQH 213


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,716,806
Number of Sequences: 53049
Number of extensions: 800914
Number of successful extensions: 2325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)