Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060526.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    31   0.77 
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     31   0.77 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium transp...    29   4.1  
AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen stru...    29   4.1  
AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen stru...    29   4.1  
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 300 WGRFCFSSADP---DVCXAVLKTWCSRGWNCLF 211
           +G  CF   DP   +V  A+ KTWC + ++C F
Sbjct: 260 FGNLCFKCGDPCCGEVFQALQKTWCVKCFSCSF 292


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 300 WGRFCFSSADP---DVCXAVLKTWCSRGWNCLF 211
           +G  CF   DP   +V  A+ KTWC + ++C F
Sbjct: 260 FGNLCFKCGDPCCGEVFQALQKTWCVKCFSCSF 292


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/57 (36%), Positives = 21/57 (36%)
 Frame = +2

Query: 41  GPGSGVIFPPFP*DVRIPTSPGIIPCHVCGPLEACSIPAGIVIPGSAATPNGHFRRG 211
           GPG    FPP       P  PG  P    GP    S P G   PG    P G F  G
Sbjct: 262 GPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGPGMP-GSFAPG 317


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHTWHGI-MPGDVGILTSQGKGGN 61
           P   CP G A  PG   P G   A   P    G   PG  G   + G  GN
Sbjct: 149 PCKPCPQGPAGAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASGAPGN 199


>Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.6 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 61
           P   CP G A  PG   PAG   A+  P    +   PG  G     G  GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194


>Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.4 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 61
           P   CP G A  PG   PAG   A+  P    +   PG  G     G  GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194


>U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium
           transporter homolog protein4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 285 SRTAPMGRMRKIHAVHPNL-LTYTAKLFDTRSSFDDQDE 398
           S+  P+GR  +I +VHP + L   A ++D   S  + D+
Sbjct: 452 SKHLPVGRKNRIMSVHPEMSLEQLASVYDRTGSVGESDQ 490


>AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-3) protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 61
           P   CP G A  PG   PAG   A+  P    +   PG  G     G  GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194


>AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-117) protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 61
           P   CP G A  PG   PAG   A+  P    +   PG  G     G  GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = -3

Query: 210 PLLKCPLGVAADPGXTMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 61
           P   CP G A  PG   PAG   A+  P        PG  G     G  GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGQDGQPGAPGNKGPSGPNGN 194


>Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D1.3 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 213 FPLLKCPLGVAADPGXTMPAGMLHASSGPHT 121
           F  +KCP G A   G + PAG    S  P T
Sbjct: 158 FDCIKCPAGPAGPAGSSGPAGPAGPSGQPGT 188


>Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical
           protein F54D1.2 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 213 FPLLKCPLGVAADPGXTMPAGMLHASSGPHT 121
           F  +KCP G A   G + PAG    S  P T
Sbjct: 142 FDCIKCPAGPAGPAGSSGPAGPAGPSGQPGT 172


>AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical
           protein C36B7.1 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 336 WDGLREFYASYPWGRFCFSSADP 268
           W G+ +FY  Y + R CF   +P
Sbjct: 354 WGGIHQFYTEYFFPRHCFEWLNP 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,415
Number of Sequences: 27780
Number of extensions: 378736
Number of successful extensions: 1207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)