Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060526.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 544 LCXQLGEAXXXSEIVGSPNPEVSGSXPQP 630
           +C Q+ +    SE  G+ +P+     PQP
Sbjct: 6   ICKQILKRSAESEFEGASSPKKRNKNPQP 34


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 154 RDAARLKRSAYVAWDNARRRRDPNI 80
           +DA ++     V W N R +R  NI
Sbjct: 342 KDACQMDSGGPVLWQNPRTKRLVNI 366


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 111 IMPGDVGILTSQGKGGNIT 55
           +MP D+ +  S G GG ++
Sbjct: 173 VMPHDIAVNASTGNGGLVS 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,434
Number of Sequences: 438
Number of extensions: 4943
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)