Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060526.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17070.1 68415.m01971 expressed protein contains Pfam profile... 35 0.058
At5g38130.1 68418.m04594 transferase family protein similar to a... 30 1.3
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P... 29 2.9
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 29 3.8
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 29 3.8
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P... 29 3.8
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P... 29 3.8
At1g29670.1 68414.m03626 GDSL-motif lipase/hydrolase family prot... 29 3.8
At4g10800.1 68417.m01760 expressed protein predicted proteins, A... 28 6.7
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 28 6.7
At1g51140.1 68414.m05749 basic helix-loop-helix (bHLH) family pr... 28 6.7
At5g36160.1 68418.m04357 aminotransferase-related similar to nic... 27 8.8
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ... 27 8.8
>At2g17070.1 68415.m01971 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function;
expression supported by MPSS
Length = 263
Score = 34.7 bits (76), Expect = 0.058
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 163 NASRDAARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKVIAKA-KSARA 2
N S+DA + + + RR+ ++SGE +KY A+ +S+KK K KS +A
Sbjct: 95 NISKDALSQMKEGLMEIQSILRRKRGDLSGEVKKYLASRKSFKKTFQKVQKSLKA 149
>At5g38130.1 68418.m04594 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 462
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 357 WRYMSADWDGLREFYASYPWGRFCFSSADPDVCXAVLKTWCSRG 226
+ +M AD +F+ + W + C + +DP + VLK W G
Sbjct: 183 YNHMVADGTCFWKFF--HTWSKICLNGSDPSIQSIVLKDWFCDG 224
>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At4g04130
Length = 1009
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 321 EFYASYPWGRFCFSS 277
EF+ SYPWGR F S
Sbjct: 149 EFFMSYPWGRVAFES 163
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 229 PGAPRL*DGXTDVRISRGKAEPPP 300
P PR+ DG + RGKA PPP
Sbjct: 388 PPGPRMPDGTRGFTMGRGKAIPPP 411
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 229 PGAPRL*DGXTDVRISRGKAEPPP 300
P PR+ DG + RGKA PPP
Sbjct: 390 PPGPRMPDGTRGFTMGRGKAIPPP 413
>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 944
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 321 EFYASYPWGRFCFSS 277
EF+ +YPWGR FSS
Sbjct: 223 EFFMAYPWGREAFSS 237
>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At3g42690
Length = 1200
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 321 EFYASYPWGRFCFSS 277
EF+ SYPWGR F S
Sbjct: 284 EFFLSYPWGRVSFES 298
>At1g29670.1 68414.m03626 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile: PF00657
Lipase/Acylhydrolase with GDSL-like motif
Length = 363
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 133 RSAYVAWDNARRRRDPNISGERRKYNAASRS 41
R+AYV WD N+ RR YNA S S
Sbjct: 320 RNAYVFWDAFHPTEAANVIIARRSYNAQSAS 350
>At4g10800.1 68417.m01760 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 283
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 479 IRPGYSVVVALLLDRLITALFVLP 408
+R G S V+++LLDRL + L +LP
Sbjct: 70 VRLGISNVISMLLDRLSSLLVILP 93
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -3
Query: 429 HCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD-GLREFYASYPWGRFCFSSADPDVCXA 253
H VP+SR R R S W GLR FY S+P + F VC
Sbjct: 143 HVSFLVTVPVSRGKREHCEYVSRNLNRASYFWSLGLRAFYFSFPLFLWTFGPIPMFVCCC 202
Query: 252 VLKT 241
++ +
Sbjct: 203 MMSS 206
>At1g51140.1 68414.m05749 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 204 EEGINNSIPWSTTSLR--RPHRRQDQQRKSRTAPMGRMRKIHAVHPNLLTYT 353
E+ +++SIP + R H R +R RT RMRK+ + PN+ T T
Sbjct: 293 EQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQT 344
>At5g36160.1 68418.m04357 aminotransferase-related similar to
nicotianamine aminotransferase B GI:6469087 from
[Hordeum vulgare subsp. vulgare]
Length = 420
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 264 VCXAVLKTWCSRGWNCLFPLLKCPLGVAADPGXTMP-AGMLHASSGPHTW-HGIMPGDVG 91
V A+ K W GW + + P G+ D G +++ S+ P T+ G MP +G
Sbjct: 246 VLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQGAMPDIIG 305
>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
contains Pfam domains, PF02733: DAK1 domain and PF02734:
DAK2 domain
Length = 595
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 145 ARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKK 32
A+ RS+YV+ +N DP YNAA+R+ K+
Sbjct: 552 AQAGRSSYVSAENLATVPDPGAMAAAGWYNAAARAVKE 589
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,819
Number of Sequences: 28952
Number of extensions: 359740
Number of successful extensions: 1208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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