Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060525.seq
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.53 
UniRef50_A2DIP7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q6C0Q5 Cluster: Yarrowia lipolytica chromosome F of str...    34   3.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.53
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -3

Query: 585 AERWYLPARTYKRSYHQ 535
           AE WYLPART+KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A2DIP7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 251

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 662 SKSQYRYNGYPILQTETHYCFTAENRQSGGTYPRGLTRGPTTSNYTNYNFCGSIFITRCY 483
           +K+ +     P   TET++   A N   GG   RG   G  + N T+    G+ FI+   
Sbjct: 31  NKNVFEERSDPSYLTETNHGGNAVNGSGGGAGYRGGKGGENSDNITSIGISGTSFISPSS 90

Query: 482 SFT 474
           SFT
Sbjct: 91  SFT 93


>UniRef50_Q6C0Q5 Cluster: Yarrowia lipolytica chromosome F of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome F of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 137

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -1

Query: 158 CHSLDTVHKPPAYIFLCSLRRKFRVSNGPVSATS 57
           CH LDT    PA   LC + R   VS GP  ATS
Sbjct: 8   CHILDTTRGRPAENVLCQIYRIGNVSGGPQRATS 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,938,081
Number of Sequences: 1657284
Number of extensions: 11806388
Number of successful extensions: 27688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27685
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)