Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060525.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 677 P*DVS-SKSQYRYNGYPILQTETHYCFTAENRQSGGTYPR 561
           P D+S S+ + +    P+L     YC    +R S G  PR
Sbjct: 171 PVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPR 210


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 110 CSLRRKFRVSNGPVSATSTLSSESG 36
           C + R+ RVS+G VS       E+G
Sbjct: 74  CVISRQLRVSHGCVSKILNRYQETG 98


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 49  HRSQDFRYYCTEHP 8
           HR+ D  ++C+ HP
Sbjct: 339 HRTVDDYFFCSPHP 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,416
Number of Sequences: 336
Number of extensions: 2995
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)